genome.fa.s8913.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008913.1 Hibiscus syriacus cultivar Beakdansim tig00112216_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  629305

Tables:   1   2   3   4   

This is table  2  of  4  ( 398 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154943--155139	98	2.0	98	89	0	304	27	19	19	32	1.96
156333--156591	95	2.7	95	89	3	376	32	16	17	32	1.93
166687--166740	4	12.5	4	84	11	63	75	0	1	22	0.89
166682--166749	9	7.8	9	83	8	79	75	1	1	22	0.97
166701--166748	12	3.9	13	89	10	66	72	0	0	27	0.84
166953--167006	2	27.0	2	100	0	108	50	0	0	50	1.00
167177--167226	15	3.3	15	78	18	59	56	4	4	36	1.37
169346--169553	65	3.2	64	76	13	192	28	18	22	30	1.97
176006--176079	21	3.5	21	87	3	105	22	14	39	22	1.91
186480--186524	20	2.2	20	88	0	63	37	20	2	40	1.65
191317--191397	42	2.0	42	85	4	112	32	29	12	25	1.92
191341--191477	39	3.4	40	78	10	113	29	27	13	29	1.94
191317--191590	20	13.6	20	72	11	114	30	25	12	31	1.93
191747--191784	16	2.5	15	84	12	51	28	5	0	65	1.14
192418--192471	24	2.2	24	93	0	90	20	18	20	40	1.91
194737--194772	18	2.0	18	94	0	63	55	25	2	16	1.55
194997--195071	39	1.9	39	91	5	125	29	13	17	40	1.87
195072--195127	20	2.8	20	76	10	69	26	21	23	28	1.99
195080--195177	49	2.0	49	89	0	151	28	19	23	28	1.98
195228--195274	20	2.3	20	77	0	58	25	27	19	27	1.99
195229--195359	49	2.6	50	81	2	138	27	22	18	32	1.97
196807--196924	21	5.7	19	77	16	110	26	19	33	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
196807--196925	42	2.8	41	86	7	159	26	19	33	20	1.96
198890--198952	20	3.2	20	88	2	92	47	22	17	12	1.81
198953--198990	20	1.9	20	88	0	58	18	13	21	47	1.82
199328--199378	22	2.3	22	86	0	75	17	21	43	17	1.88
199572--199613	19	2.2	19	86	0	57	23	16	26	33	1.96
200472--200584	60	1.9	60	83	0	145	38	17	10	32	1.84
202291--202331	18	2.1	21	86	13	61	24	7	12	56	1.61
220849--220901	20	2.5	22	79	14	67	37	22	13	26	1.91
230863--230943	23	3.7	23	77	8	96	25	25	24	23	2.00
230862--230961	43	2.3	42	80	8	112	27	25	25	23	2.00
239282--239361	4	20.0	4	84	0	97	46	5	3	45	1.43
239282--239361	6	13.3	6	86	0	97	46	5	3	45	1.43
239978--240026	24	2.1	23	84	3	62	57	4	20	18	1.57
240259--240329	34	2.1	34	100	0	142	39	25	8	26	1.84
240771--240819	26	1.9	26	91	4	82	36	2	12	48	1.52
245195--245239	23	2.0	23	86	0	63	31	31	4	33	1.78
250139--250186	19	2.5	19	96	0	87	43	8	16	31	1.78
252385--252552	83	2.0	83	98	0	327	27	20	20	30	1.98
269022--269178	60	2.7	57	73	7	136	42	5	17	34	1.72
269493--269525	17	2.0	17	88	5	50	33	9	18	39	1.82
276192--276229	18	2.1	18	100	0	76	31	5	5	57	1.43
279023--279138	60	1.9	60	86	10	164	48	7	2	41	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
279237--279406	14	12.7	14	76	12	169	45	8	1	43	1.45
279360--279479	16	7.6	16	69	25	60	51	11	0	35	1.44
279365--279485	19	6.4	19	65	27	69	51	10	0	37	1.43
279401--279488	35	2.5	35	94	0	149	52	12	1	34	1.47
279420--279489	8	7.9	9	75	22	51	52	10	0	37	1.35
279696--279919	49	4.6	49	85	5	276	44	11	0	43	1.46
281519--281562	19	2.3	19	100	0	88	22	6	31	38	1.81
283022--283059	16	2.3	17	86	13	53	47	13	0	39	1.42
282941--283102	82	2.0	83	95	1	290	50	8	3	38	1.49
283560--283625	28	2.4	28	80	10	89	51	15	0	33	1.43
283770--283804	5	7.0	5	100	0	70	0	40	0	60	0.97
286947--286980	16	2.1	16	88	0	50	50	0	2	47	1.16
287022--287055	16	2.0	18	88	11	54	26	2	5	64	1.30
287525--287772	130	1.9	130	91	0	406	36	12	14	35	1.85
288169--288244	35	2.2	35	90	4	118	36	1	22	39	1.63
289367--289430	18	3.6	18	87	8	87	14	20	20	45	1.85
290761--290865	31	3.4	31	89	0	156	20	12	14	53	1.72
295312--295872	279	2.0	279	100	0	1122	31	15	15	37	1.89
296985--297038	22	2.5	22	93	0	90	27	24	22	25	2.00
297194--297234	16	2.6	16	88	3	57	34	21	7	36	1.82
308161--308217	20	2.9	19	76	7	60	38	22	15	22	1.92
308225--308372	60	2.5	60	79	2	154	28	21	13	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
308285--308360	40	1.9	40	86	5	109	25	23	17	34	1.96
308224--308356	20	6.7	20	71	13	78	27	21	15	36	1.93
312672--312707	9	3.9	9	92	7	63	0	8	0	91	0.41
312671--312707	10	3.8	10	92	7	67	0	8	0	91	0.41
312671--312707	19	1.9	19	100	0	74	0	8	0	91	0.41
313008--313050	17	2.5	17	84	3	50	13	4	37	44	1.65
318668--318710	14	2.9	14	93	6	68	34	0	58	6	1.25
318668--318706	16	2.4	16	100	0	78	38	0	56	5	1.22
318664--318716	14	3.7	15	83	14	67	33	3	56	5	1.41
318668--318716	16	3.2	15	88	11	73	36	2	55	6	1.37
319676--319727	21	2.5	21	96	0	95	26	17	19	36	1.94
320773--320815	21	2.0	21	86	8	61	27	27	9	34	1.88
320866--320904	20	2.0	20	89	0	60	35	20	12	30	1.90
323952--323977	8	3.2	8	100	0	52	61	0	38	0	0.96
323998--324060	32	2.0	31	84	9	83	47	3	36	12	1.58
325921--325964	23	1.9	23	100	0	88	18	52	20	9	1.72
331478--331545	27	2.6	27	95	4	122	32	11	14	41	1.82
336208--336253	20	2.3	20	100	0	92	19	17	28	34	1.94
340287--340322	2	18.0	2	94	0	63	47	0	52	0	1.00
347273--347297	11	2.3	11	100	0	50	32	0	16	52	1.44
349617--349677	3	21.0	3	90	6	99	32	0	1	65	1.02
349617--349677	26	2.3	26	94	5	106	32	0	1	65	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
354118--354155	14	2.7	14	87	0	58	18	13	13	55	1.69
356298--356475	89	2.0	90	89	1	277	30	17	15	36	1.91
356329--356562	89	2.7	84	81	8	206	29	18	15	36	1.92
357382--357468	36	2.4	36	90	3	131	28	11	26	33	1.91
358658--359304	123	5.3	123	85	3	864	38	16	19	25	1.92
359443--359505	3	21.0	3	90	6	101	31	1	0	66	1.01
360885--360914	5	6.0	5	100	0	60	20	0	0	80	0.72
362574--362689	44	2.6	44	80	0	133	31	16	22	29	1.96
362574--362737	44	3.8	44	79	2	125	34	15	20	29	1.94
362982--363023	22	2.0	22	85	4	59	26	28	7	38	1.82
362741--363162	115	3.7	113	80	6	426	25	21	13	39	1.90
365825--365863	19	2.0	20	90	9	64	76	7	5	10	1.13
367827--367923	20	4.8	20	74	2	86	16	19	21	42	1.89
368677--368719	22	2.0	22	95	0	77	41	27	11	18	1.85
368709--368773	21	3.1	21	75	4	78	36	26	18	18	1.94
373373--373407	17	2.1	17	88	0	52	57	14	11	17	1.66
374613--374661	21	2.3	22	85	3	64	24	4	0	71	1.03
374808--374868	2	31.0	2	96	3	115	49	0	0	50	1.00
375303--375363	28	2.3	27	75	25	67	55	3	1	39	1.26
382503--382544	20	2.1	20	86	8	59	42	23	4	28	1.74
383790--383816	2	13.5	2	100	0	54	51	0	0	48	1.00
386248--386274	3	9.0	3	100	0	54	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
386464--386497	15	2.3	15	94	0	59	17	5	38	38	1.74
389570--389748	43	4.2	43	84	1	209	35	17	18	29	1.94
396358--396397	17	2.3	18	86	8	64	47	2	2	47	1.29
397183--398194	339	3.0	337	92	3	1603	43	5	7	43	1.54
400751--400963	103	2.1	103	93	0	372	27	13	23	36	1.92
400972--401039	23	3.0	23	86	0	82	20	25	26	27	1.99
402293--402339	23	2.0	23	84	16	60	65	8	2	23	1.31
406066--406130	31	2.1	31	82	2	78	43	3	15	38	1.62
410323--410356	7	5.0	7	96	3	61	11	0	58	29	1.33
411893--411929	15	2.6	15	91	8	60	54	0	0	45	1.00

Tables:   1   2   3   4