genome.fa.s8913.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008913.1 Hibiscus syriacus cultivar Beakdansim tig00112216_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  629305

Tables:   1   2   3   4   

This is table  4  of  4  ( 398 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
554003--554037	18	1.9	18	88	0	52	54	0	17	28	1.43
555193--555253	12	5.1	12	71	15	54	27	13	21	37	1.90
555175--555290	24	4.8	24	85	6	146	25	15	18	40	1.90
555227--555300	24	3.1	24	84	3	87	22	14	18	43	1.87
558712--558746	18	1.9	18	88	0	52	54	0	17	28	1.43
559901--559939	12	3.2	12	79	13	53	28	12	23	35	1.91
559885--560000	24	4.8	24	86	6	146	25	14	18	40	1.89
577030--577098	23	3.0	23	80	4	68	31	24	23	20	1.98
579164--579233	12	5.8	12	78	6	70	51	18	14	15	1.77
579162--579256	24	4.0	24	83	0	109	50	17	12	18	1.77
579162--579270	48	2.3	48	82	6	123	50	17	13	18	1.78
579193--579270	24	3.2	24	78	7	70	48	17	14	19	1.81
583544--583572	2	14.5	2	100	0	58	51	0	0	48	1.00
583746--583828	12	6.9	12	72	10	71	48	18	14	19	1.81
583741--583828	24	3.7	24	84	0	113	48	18	13	19	1.80
583734--583842	48	2.3	47	83	3	128	50	17	12	19	1.78
583734--583842	24	4.5	25	78	6	100	50	17	12	19	1.78
591521--591547	2	13.5	2	100	0	54	48	0	0	51	1.00
592637--592686	5	10.0	5	88	0	64	6	40	36	18	1.75
592686--592736	6	8.5	6	100	0	102	0	15	50	33	1.44
597455--597493	5	7.8	5	91	0	51	5	41	35	17	1.72
597491--597599	6	18.2	6	98	0	182	3	16	49	30	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
599130--599204	30	2.5	30	86	0	114	40	0	13	46	1.43
600045--600095	19	2.6	20	84	3	68	43	5	13	37	1.69
609116--609339	64	3.5	63	79	8	197	31	20	21	26	1.98
609650--609697	12	4.0	12	92	7	80	31	8	25	35	1.85
609713--609786	29	2.6	29	97	2	141	43	16	21	18	1.88
609871--609948	15	5.2	15	87	0	111	15	21	32	30	1.94
609871--609948	30	2.6	30	93	0	129	15	21	32	30	1.94
616130--616353	64	3.5	63	79	8	197	31	20	21	25	1.98
616663--616709	12	3.9	12	91	0	67	29	6	25	38	1.81
616725--616798	29	2.6	29	97	2	141	43	16	21	18	1.88
616883--616960	15	5.2	15	96	0	147	14	20	33	32	1.92
623126--623289	63	2.6	65	83	10	198	31	19	22	26	1.98
623174--623348	63	2.8	62	81	6	185	30	22	21	25	1.99
623657--623703	12	3.8	13	89	10	73	29	4	25	40	1.75
623721--623790	29	2.4	29	95	2	124	45	15	20	18	1.85
623873--623935	15	4.2	15	91	0	108	15	20	31	31	1.94

Tables:   1   2   3   4

The End!