genome.fa.s8913.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008913.1 Hibiscus syriacus cultivar Beakdansim tig00112216_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  629305

Tables:   1   2   3   4   

This is table  3  of  4  ( 398 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414632--414712	30	2.7	30	94	0	135	44	22	7	25	1.79
414633--414683	16	3.3	16	72	10	61	45	23	7	23	1.79
414841--414917	33	2.4	33	91	2	120	25	46	15	11	1.80
414947--415033	30	2.8	31	89	3	122	13	12	45	27	1.80
416641--416680	2	20.0	2	90	10	64	50	0	2	47	1.14
416683--417072	37	10.6	37	76	9	300	45	2	6	45	1.45
416805--416854	2	25.5	2	95	4	93	50	0	0	50	1.00
416731--416926	108	1.8	107	85	8	281	46	2	5	45	1.40
416683--417122	72	6.0	73	77	12	368	44	2	7	45	1.45
416641--417000	183	2.0	182	84	8	481	46	3	5	45	1.43
417087--417145	25	2.4	23	73	13	64	35	0	8	55	1.30
418482--418562	30	2.7	29	75	11	74	16	13	8	61	1.55
419583--419653	32	2.2	32	87	5	99	57	2	1	38	1.22
419584--419654	13	5.3	13	75	17	58	57	2	1	38	1.22
419664--419718	21	2.6	21	78	18	60	67	1	5	25	1.22
419668--419719	20	2.5	19	76	17	50	67	1	5	25	1.23
419824--419896	2	37.5	2	76	10	53	54	2	4	38	1.34
419791--419900	45	2.5	45	81	10	111	57	5	3	33	1.39
421558--421904	106	3.3	105	89	4	511	21	18	25	34	1.96
429997--430041	19	2.4	19	80	0	54	68	6	2	22	1.24
433390--433442	2	27.5	2	85	14	76	52	0	1	45	1.11
433383--433451	6	9.9	7	82	16	65	55	1	1	42	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
433462--433516	21	2.6	21	78	18	60	67	1	5	25	1.22
446089--446175	29	3.0	29	86	1	120	32	14	11	41	1.82
447458--447487	15	2.0	15	93	0	51	56	30	0	13	1.37
450841--450922	29	2.8	29	88	1	119	31	15	10	41	1.82
454241--454333	21	4.5	21	78	4	100	39	18	24	17	1.91
454241--454333	41	2.3	41	100	0	186	39	18	24	17	1.91
454260--454394	41	3.3	41	82	6	132	38	20	21	19	1.94
454322--454416	20	4.7	20	80	2	91	34	24	17	23	1.96
454604--454647	22	2.0	22	95	0	79	20	45	15	18	1.85
454911--454948	20	1.9	20	88	0	58	13	15	21	50	1.78
457370--457430	20	3.1	19	79	9	68	44	18	24	13	1.85
457395--457480	33	2.6	33	92	1	136	38	25	24	11	1.89
457465--457508	20	2.2	20	96	4	81	50	22	15	11	1.76
457482--457543	30	2.0	32	90	6	101	50	19	17	12	1.78
457370--457546	19	10.1	19	67	23	93	44	21	21	12	1.85
458123--458174	20	2.6	20	93	0	86	25	19	28	26	1.98
458205--458297	41	2.3	41	98	0	132	18	23	18	39	1.92
458210--458280	21	3.4	21	80	3	99	15	23	18	42	1.88
458224--458297	20	3.7	20	80	3	94	17	22	18	40	1.91
458681--458733	2	26.5	2	100	0	106	50	0	0	49	1.00
458722--459033	36	8.6	36	79	14	288	45	4	5	44	1.46
458720--459044	73	4.4	73	82	10	387	45	4	5	44	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458913--458979	31	2.2	30	86	5	91	47	5	2	43	1.43
458941--459041	38	2.6	39	78	9	118	45	5	4	43	1.50
459638--459681	3	15.3	3	86	9	65	29	0	2	68	1.02
459633--459681	14	3.4	14	86	5	71	30	0	2	67	1.02
459630--459696	14	4.8	13	82	12	55	28	0	2	68	1.04
459892--459921	13	2.3	13	94	0	51	30	0	0	70	0.88
461732--461768	17	2.2	16	90	4	56	24	0	0	75	0.80
461732--461768	8	4.5	8	86	6	56	24	0	0	75	0.80
461783--461835	2	28.5	2	81	14	69	43	0	1	54	1.11
461777--461873	10	8.6	12	72	23	70	38	1	4	56	1.25
462573--462945	36	10.1	38	76	10	301	45	3	5	45	1.44
462571--462939	73	5.0	75	81	10	404	44	3	5	45	1.45
462804--462869	31	2.2	30	89	5	98	48	4	6	40	1.48
462832--462947	38	3.1	37	82	9	146	46	5	6	42	1.50
462940--463040	36	2.7	38	78	12	109	43	0	4	50	1.30
462940--463038	38	2.6	38	81	10	114	43	1	5	50	1.30
463071--463100	3	10.0	3	100	0	60	33	0	0	66	0.92
464275--464326	2	26.5	2	96	3	97	50	0	0	50	1.00
464360--464479	12	10.4	11	68	21	50	21	1	4	72	1.10
464417--464457	3	14.3	3	90	10	68	29	0	0	70	0.87
464417--464457	14	2.9	14	96	3	73	29	0	0	70	0.87
464408--464521	9	11.9	9	70	21	56	22	5	1	70	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
471004--471051	13	3.8	12	80	5	51	27	8	33	31	1.86
471003--471059	25	2.3	25	84	6	71	28	10	31	29	1.90
471375--471463	30	3.0	30	80	6	83	43	8	19	28	1.80
478905--478930	13	2.0	13	100	0	52	15	30	23	30	1.95
486188--486364	90	2.0	90	91	0	291	38	9	5	46	1.60
490067--490105	20	2.0	20	94	0	69	30	25	7	35	1.84
497396--498022	312	2.0	313	99	0	1238	38	14	11	35	1.82
498971--499000	2	15.5	2	93	6	53	50	0	0	50	1.00
498987--499070	33	2.5	34	96	1	152	38	0	1	60	1.04
498979--499058	42	1.9	42	82	10	101	38	0	1	60	1.05
501732--501769	18	2.1	18	90	0	58	71	10	15	2	1.25
508833--508985	61	2.5	61	87	2	218	28	29	26	15	1.96
508878--509013	32	4.4	31	75	6	114	27	29	26	16	1.97
508851--508950	29	3.3	29	71	8	92	28	31	26	15	1.95
514070--514200	61	2.1	61	87	8	187	29	25	25	19	1.98
517285--517341	23	2.4	24	85	11	82	43	3	1	50	1.29
517351--517599	7	34.9	7	71	20	83	55	3	7	34	1.45
517290--517347	2	29.0	2	80	13	66	44	1	1	51	1.21
517340--517592	8	30.7	9	66	27	61	54	3	7	34	1.46
517415--518105	26	25.6	27	69	18	182	51	3	5	39	1.41
517505--517605	43	2.3	43	80	9	100	57	2	7	31	1.43
517501--517605	35	2.9	36	86	6	142	57	2	7	32	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
517602--517863	2	130.0	2	76	14	200	51	2	3	41	1.32
517917--517962	23	2.0	23	83	8	58	39	4	6	50	1.48
517971--518078	14	7.3	14	76	9	90	57	2	5	34	1.36
517999--518078	7	10.9	7	77	9	70	60	1	3	35	1.23
517967--518093	37	3.4	38	84	6	170	55	3	5	35	1.39
518254--518314	31	2.0	31	86	0	86	24	18	19	37	1.94
518859--519183	55	5.9	55	90	4	460	31	25	15	27	1.96
519187--519296	37	3.0	37	89	2	150	22	20	18	39	1.93
520506--520558	24	2.2	24	96	0	97	16	22	16	43	1.88
520600--520748	6	24.0	6	72	15	85	4	17	0	78	0.90
520604--520745	25	5.7	24	76	16	112	4	16	0	78	0.90
520610--520757	8	18.8	8	77	10	101	4	18	0	77	0.92
520610--520757	15	9.4	15	78	16	115	4	18	0	77	0.92
520594--520724	62	2.1	63	86	9	180	4	16	0	79	0.89
520636--520748	35	3.2	35	77	18	119	3	17	0	78	0.88
520628--520757	22	6.0	22	79	15	105	3	18	0	78	0.88
520602--520757	62	2.5	61	80	12	174	3	18	0	77	0.92
529272--529425	48	3.2	48	89	4	217	38	18	11	31	1.87
532576--532631	19	2.9	19	91	2	85	33	14	17	33	1.90
532575--532647	19	3.7	19	87	5	83	30	15	21	32	1.94
532635--532679	20	2.2	20	92	0	72	15	13	24	46	1.82
532626--532801	60	2.9	58	77	10	167	21	15	21	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
532673--532801	20	6.4	20	84	7	163	21	15	21	41	1.90
533777--533848	27	2.6	27	88	2	108	23	11	11	54	1.68
541465--541678	36	6.0	35	73	7	155	29	18	17	34	1.94
541465--541673	72	2.9	72	86	0	310	29	18	18	33	1.95
542790--542841	3	19.0	3	78	21	53	71	0	0	28	0.87
542790--542841	16	3.2	16	75	20	54	71	0	0	28	0.87
542792--542841	13	3.9	13	84	10	59	72	0	0	28	0.86
542820--542894	27	2.7	27	74	12	71	52	5	1	41	1.33
550749--550802	24	2.2	24	90	3	81	53	3	9	33	1.50
552650--552690	18	2.3	18	95	0	73	19	51	19	9	1.74

Tables:   1   2   3   4