genome.fa.s8917.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008917.1 Hibiscus syriacus cultivar Beakdansim tig00112221_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  766343

Tables:   1   2   3   4   

This is table  2  of  4  ( 391 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151858--151936	32	2.5	31	80	15	99	41	3	6	48	1.47
165206--165230	13	1.9	13	100	0	50	40	24	12	24	1.88
173628--173686	21	2.8	21	86	0	64	23	5	18	52	1.65
187180--187239	17	3.6	17	84	2	68	35	13	6	45	1.70
190898--190947	15	3.3	15	97	0	91	10	28	24	38	1.87
193501--193549	17	2.9	17	84	0	62	40	16	4	38	1.67
200022--200146	24	5.3	24	80	7	121	28	21	28	21	1.99
200096--200146	23	2.2	23	86	6	77	35	21	23	19	1.96
206926--207238	45	7.0	45	85	1	360	31	20	9	38	1.85
207069--207138	23	3.1	23	64	12	54	32	21	11	34	1.89
213922--214261	45	7.6	45	85	3	427	29	20	10	40	1.85
213922--214225	134	2.2	133	88	2	428	29	19	9	41	1.84
213922--214261	179	1.9	181	85	4	474	29	20	10	40	1.85
215883--215942	15	4.0	15	80	0	57	38	16	6	38	1.75
220688--220769	32	2.6	32	86	1	112	32	2	23	41	1.67
220688--220756	31	2.2	31	89	2	102	33	2	21	42	1.68
227113--227150	2	20.5	2	84	15	55	50	0	0	50	1.00
233044--233173	42	3.1	42	79	8	140	30	20	19	30	1.97
233223--233554	50	6.7	50	75	6	253	25	17	15	41	1.88
233237--233503	99	2.7	99	81	5	315	25	16	16	41	1.89
233604--233760	50	3.1	48	74	10	145	26	17	17	37	1.93
237205--237254	17	2.9	17	81	0	64	38	8	12	42	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
237205--237269	17	3.8	18	74	13	50	40	7	10	41	1.69
238606--238642	2	18.5	2	100	0	74	51	0	0	48	1.00
242763--242801	20	2.0	20	84	0	51	64	5	30	0	1.15
247051--247144	41	2.3	41	87	3	136	29	21	21	27	1.98
251228--251271	21	2.0	22	86	4	63	40	22	0	36	1.54
254973--255017	21	2.0	23	87	8	67	37	15	0	46	1.46
260984--261048	32	2.0	32	100	0	130	35	6	24	33	1.80
262462--262514	20	2.7	20	80	8	63	47	15	11	26	1.79
275815--275867	23	2.4	22	82	14	65	49	5	0	45	1.26
288436--288492	28	2.1	28	83	9	73	70	1	8	19	1.23
291776--291837	31	2.0	31	96	0	115	27	29	1	41	1.65
292996--293035	18	2.2	18	100	0	80	35	5	25	35	1.78
298084--298178	46	2.2	45	80	16	112	49	14	2	33	1.56
306187--306305	34	3.5	33	77	11	107	46	21	13	18	1.83
306187--306285	34	2.9	34	79	7	110	47	20	13	19	1.82
309597--309638	21	2.0	21	95	0	75	30	14	7	47	1.71
309633--309735	33	3.2	33	88	2	156	32	6	15	45	1.72
309777--309829	15	3.4	15	75	10	61	33	7	11	47	1.68
312181--312230	20	2.6	19	81	12	57	60	2	10	28	1.40
313134--313279	32	4.6	31	80	7	150	27	29	26	17	1.97
315091--315173	23	3.6	23	95	0	139	15	27	28	27	1.96
321808--321852	23	2.0	23	90	0	72	17	26	22	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
323836--325549	864	2.0	859	91	1	2799	31	20	16	31	1.95
326276--326317	21	2.0	22	85	4	59	42	16	0	40	1.48
328377--328422	2	23.5	2	95	4	85	50	0	0	50	1.00
328853--328880	2	14.0	2	100	0	56	50	0	0	50	1.00
332978--333030	17	3.1	18	84	10	67	37	7	15	39	1.75
336756--336808	17	3.1	17	83	5	63	39	7	13	39	1.73
338127--338223	29	3.2	29	80	7	113	38	12	11	38	1.79
343158--343349	7	26.9	7	76	19	184	55	2	1	40	1.20
343159--343360	2	110.0	2	70	26	137	54	2	0	41	1.22
343159--343360	5	36.7	6	72	24	137	54	2	0	41	1.22
343155--343360	44	5.0	41	76	20	180	55	2	0	40	1.21
348357--348557	42	4.8	42	78	9	203	34	16	22	26	1.95
348357--348537	41	4.3	42	80	7	192	35	17	21	24	1.95
348357--348563	43	4.9	41	79	7	191	34	17	22	25	1.96
352939--352995	23	2.5	23	88	0	87	42	7	15	35	1.75
352907--353073	87	1.9	86	95	1	298	41	10	13	34	1.79
353026--353073	23	2.1	23	92	0	78	37	10	16	35	1.83
353099--353597	200	2.5	198	84	5	632	32	14	13	39	1.85
353432--353768	177	1.9	178	84	3	455	32	12	13	40	1.82
356252--356296	19	2.4	19	84	0	54	57	2	4	35	1.31
356846--357212	199	1.8	200	91	1	603	32	15	14	37	1.88
357480--357524	19	2.4	19	96	0	81	55	8	2	33	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
359065--359120	18	3.1	18	86	0	76	8	30	0	60	1.27
361764--362513	182	4.2	182	89	1	1091	28	15	14	40	1.87
363257--363567	164	1.9	165	86	2	446	31	16	19	32	1.94
363257--363616	164	2.2	164	84	1	443	31	16	19	31	1.94
363472--363614	41	3.5	40	73	14	123	32	16	18	32	1.94
363258--363659	82	4.9	83	79	2	355	32	16	18	31	1.94
363305--363659	164	2.2	163	83	4	419	32	17	18	31	1.94
365226--365256	16	1.9	16	100	0	62	58	0	19	22	1.40
367080--367105	6	4.3	6	100	0	52	15	0	50	34	1.45
370658--370702	20	2.2	20	92	0	72	17	42	17	22	1.89
374321--374380	31	2.0	29	81	12	68	60	0	1	38	1.07
374348--374525	41	4.2	42	78	14	129	48	6	2	42	1.40
374348--374537	40	4.6	39	79	12	147	48	6	2	43	1.40
374375--374569	81	2.3	82	81	10	200	46	8	2	43	1.45
386780--386824	19	2.4	19	100	0	90	11	28	6	53	1.61
399777--400071	48	6.2	48	84	2	369	25	16	24	33	1.96
399777--400255	96	4.9	96	76	9	426	25	16	24	33	1.96
399775--400245	158	3.2	143	82	12	411	25	16	23	33	1.96
400055--400087	16	2.1	16	94	0	57	39	9	18	33	1.82
400007--400134	62	2.0	63	86	3	177	28	15	22	33	1.95
400071--400230	48	3.4	48	83	1	180	26	16	23	33	1.96
399911--400229	158	2.0	159	98	1	622	26	15	24	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
409762--409794	15	2.3	14	94	5	57	42	3	15	39	1.62
413488--413539	13	4.0	13	76	0	59	26	19	17	36	1.94
416574--416798	111	2.0	111	92	0	369	32	20	24	23	1.98
426915--426952	2	19.5	2	94	5	69	50	0	0	50	1.00
431254--431291	19	2.0	19	89	0	58	15	31	10	42	1.81
438478--438520	20	2.2	19	84	16	52	81	0	6	11	0.87
439910--440295	134	2.9	131	82	3	472	31	16	21	30	1.95
440802--440827	2	13.0	2	100	0	52	50	0	0	50	1.00
441395--441425	16	1.9	16	93	0	53	83	0	16	0	0.64
444813--444926	60	1.9	60	85	0	156	37	19	12	30	1.88
449495--449533	19	2.1	19	85	0	51	61	2	2	33	1.23
453130--453186	21	2.8	20	86	7	80	43	0	1	54	1.10
453137--453186	20	2.5	20	78	9	57	46	0	2	52	1.12
461131--461179	24	2.0	24	88	0	71	46	16	14	22	1.82
461148--461239	24	3.8	24	85	8	125	40	18	17	23	1.91
461155--461257	48	2.1	48	80	7	111	42	18	15	23	1.88
463643--463674	13	2.5	13	94	0	55	15	25	43	15	1.86
463651--463691	18	2.4	17	95	4	73	12	24	46	17	1.82
466421--466536	56	2.1	56	96	0	214	43	20	11	25	1.85
466433--466532	31	3.4	31	64	20	79	42	21	11	26	1.85
468793--468871	28	2.8	28	94	0	131	36	29	21	12	1.90
469864--470016	73	2.1	76	91	3	249	28	28	19	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
475742--475799	23	2.7	21	84	10	80	22	29	15	32	1.95
478440--478478	20	2.0	20	90	5	62	28	28	20	23	1.99
478394--478558	80	2.0	80	86	5	226	31	27	18	23	1.97
478527--478580	20	2.7	20	94	0	99	27	35	16	20	1.94
481341--481410	25	2.9	25	93	4	117	22	12	24	40	1.89
486175--486211	14	2.6	15	83	12	51	13	24	10	51	1.73
486175--486251	28	2.8	28	86	7	95	15	19	14	50	1.78
487419--487461	20	2.0	22	86	8	63	81	0	11	6	0.87
488087--488150	28	2.3	28	77	0	74	34	34	7	23	1.84
489498--489710	43	5.0	43	89	4	299	28	13	29	28	1.94

Tables:   1   2   3   4