genome.fa.s8917.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008917.1 Hibiscus syriacus cultivar Beakdansim tig00112221_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  766343

Tables:   1   2   3   4   

This is table  4  of  4  ( 391 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
750810--750844	6	5.8	6	100	0	70	34	48	17	0	1.47
751326--751441	5	22.0	5	97	1	151	0	21	40	37	1.54
751615--751657	21	2.0	21	100	0	86	23	27	20	27	1.99
751669--751723	21	2.6	21	94	0	92	20	21	27	30	1.98
757439--757557	42	2.8	42	92	0	193	16	18	18	46	1.85
757713--757763	21	2.3	23	90	10	79	52	0	0	47	1.00
757724--757786	29	2.2	28	81	13	74	49	0	0	50	1.00
757715--757822	53	2.0	53	82	10	132	51	0	0	47	1.07
757730--757791	22	2.8	22	81	11	65	50	0	0	50	1.00
757749--757853	31	3.5	30	75	12	81	49	0	0	48	1.14
757819--757885	28	2.6	25	74	19	66	41	0	2	55	1.15
757801--757875	28	2.5	33	81	14	90	44	0	1	54	1.08
758094--758362	20	13.4	20	82	6	294	36	25	18	19	1.94
759032--759078	24	2.0	24	87	8	69	25	14	21	38	1.92
761568--761873	19	17.4	19	78	17	349	47	18	20	14	1.83
761621--761698	14	4.8	15	71	22	52	43	19	24	12	1.86
761652--761854	33	5.8	33	78	13	180	47	17	19	14	1.82
761596--761873	52	5.2	53	90	6	349	47	17	20	14	1.83
761568--761911	71	4.9	71	76	17	314	46	18	20	15	1.84
761568--761905	142	2.4	136	89	7	486	46	18	20	14	1.83
761902--762003	19	5.6	19	85	12	151	14	23	17	44	1.86
762110--762146	14	2.6	14	91	0	65	45	21	0	32	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
762127--762199	38	1.9	38	97	0	137	53	16	1	28	1.51
762113--762227	52	2.2	51	83	11	137	48	17	1	32	1.57
764057--764113	14	3.7	14	77	20	60	45	22	21	10	1.82
764038--764130	33	2.8	33	95	0	168	47	21	20	10	1.80
764001--764135	19	7.6	19	76	16	128	45	23	19	11	1.82
764131--764259	19	7.3	19	75	17	125	8	17	28	45	1.77
764131--764222	33	2.8	33	93	3	150	7	18	28	45	1.76
764303--764661	93	3.9	93	94	5	644	46	18	12	22	1.83
764303--764661	185	2.0	181	95	4	650	46	18	12	22	1.83

Tables:   1   2   3   4

The End!