genome.fa.s8917.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008917.1 Hibiscus syriacus cultivar Beakdansim tig00112221_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  766343

Tables:   1   2   3   4   

This is table  3  of  4  ( 391 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
489753--489860	42	2.6	40	85	7	135	25	22	23	29	1.99
489796--489860	20	3.2	20	69	4	58	27	24	20	27	1.99
489774--489860	41	2.1	42	89	2	131	26	22	21	28	1.99
490005--490118	42	2.7	42	80	9	135	24	21	24	29	1.99
490304--490372	34	2.0	34	85	5	93	21	18	18	40	1.91
490723--491237	132	3.9	132	85	4	657	31	20	19	28	1.97
490723--491237	264	2.0	262	87	3	748	31	20	19	28	1.97
492467--492521	21	2.6	21	75	13	60	23	9	9	58	1.58
494262--494304	18	2.4	18	76	0	50	69	2	0	27	1.00
501091--501231	17	8.4	16	67	22	76	20	4	1	73	1.07
501096--501182	23	3.9	21	72	15	68	19	4	1	74	1.05
501134--501174	3	13.7	3	80	19	50	26	0	0	73	0.84
501137--501175	10	4.2	10	81	18	57	25	0	0	74	0.82
501128--501243	21	5.6	20	71	16	60	23	3	0	73	0.99
501202--501251	21	2.4	22	84	15	63	22	4	0	74	0.99
501128--501249	30	3.9	32	74	16	80	22	4	0	72	1.01
501127--501251	46	2.7	45	76	14	121	22	4	0	73	0.99
501194--501251	22	2.8	20	80	17	64	22	3	0	74	0.97
501719--501967	137	1.8	137	86	5	367	26	20	18	34	1.96
502596--502917	54	5.8	57	75	9	236	42	17	9	31	1.80
502597--502830	111	2.1	113	83	4	296	41	18	9	30	1.82
502597--502917	111	2.9	111	79	4	283	42	17	9	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
504962--505026	16	4.2	16	72	20	50	4	16	0	78	0.91
504988--505066	18	4.3	19	71	26	62	7	16	1	74	1.11
506304--506341	20	1.9	20	94	0	67	39	18	21	21	1.93
507800--507852	8	6.4	8	79	14	54	71	1	11	15	1.22
509254--509283	15	2.0	15	93	0	51	56	6	16	20	1.62
510521--511353	43	19.7	42	75	11	564	49	6	19	25	1.72
510521--511291	84	9.1	83	75	11	590	47	6	20	25	1.74
511892--511937	2	23.0	2	100	0	92	50	0	0	50	1.00
512709--512758	20	2.4	21	90	3	84	30	26	16	28	1.96
512729--512837	57	1.9	58	94	1	193	35	21	15	27	1.93
512729--512850	57	2.1	58	90	1	192	36	22	14	27	1.93
512776--512961	92	2.0	92	86	0	255	37	22	13	27	1.91
512943--512981	20	2.0	20	94	0	69	30	17	15	35	1.91
512879--513047	77	2.2	77	93	0	284	31	20	16	31	1.95
513040--513074	16	2.2	16	94	0	61	25	14	31	28	1.95
513451--513479	13	2.2	13	100	0	58	44	13	10	31	1.78
513768--513827	27	2.3	27	88	2	86	36	8	13	41	1.74
520286--520336	26	2.0	26	96	0	93	17	13	25	43	1.86
521621--521672	26	2.0	26	96	0	95	15	13	28	42	1.85
522135--522161	14	1.9	14	100	0	54	33	14	14	37	1.88
522174--522206	14	2.4	14	90	10	50	39	12	6	42	1.67
522370--522500	33	4.3	29	69	24	74	46	0	4	48	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
522470--522520	23	2.2	23	82	0	57	45	1	1	50	1.24
522534--522588	27	2.0	29	89	7	87	43	1	0	54	1.10
522718--522771	23	2.2	24	83	6	65	48	0	0	51	1.00
538461--538508	19	2.5	19	100	0	96	29	8	29	33	1.86
540155--540189	18	1.9	18	94	0	61	71	0	0	28	0.86
540796--540832	2	18.5	2	100	0	74	48	0	0	51	1.00
560355--560628	24	11.3	24	72	7	169	41	15	20	21	1.89
560289--560628	48	7.0	47	72	11	177	42	16	20	21	1.89
563048--563078	15	2.1	15	100	0	62	19	6	29	45	1.75
564459--564572	59	1.9	59	90	0	183	35	23	15	24	1.94
573217--573336	58	2.1	59	85	4	163	35	20	16	27	1.94
581650--581718	2	34.5	2	100	0	138	49	0	0	50	1.00
602358--602395	15	2.5	15	100	0	76	34	26	13	26	1.93
602562--602602	21	2.0	21	85	0	55	53	2	4	39	1.35
605176--605243	31	2.2	30	81	2	73	32	13	7	47	1.70
609155--609240	31	3.0	26	72	18	73	58	1	6	33	1.33
609167--609240	31	2.6	27	83	12	87	59	0	8	32	1.27
609249--609309	29	2.2	27	82	5	68	47	1	6	44	1.39
609404--609513	33	3.3	33	73	13	100	54	0	9	35	1.38
609451--609515	34	1.9	34	90	6	105	53	0	7	38	1.30
609504--609548	2	22.5	2	100	0	90	51	0	0	48	1.00
610285--610348	32	2.1	30	88	5	92	18	14	14	53	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
612150--613201	527	2.0	527	100	0	2104	36	15	26	21	1.93
614614--614646	17	1.9	17	100	0	66	54	6	6	33	1.50
617618--617650	3	11.0	3	100	0	66	33	0	0	66	0.92
618578--618723	60	2.4	60	78	6	161	34	19	14	30	1.92
618828--618877	25	2.0	25	100	0	100	36	12	4	48	1.59
624590--624637	24	2.0	24	91	0	78	31	10	14	43	1.79
624954--625063	40	2.8	40	94	0	193	20	15	30	32	1.94
625168--625254	44	2.0	45	86	2	122	39	9	21	29	1.85
627846--627926	13	6.4	12	79	13	83	80	0	18	1	0.78
627846--627926	22	3.9	21	82	10	103	80	0	18	1	0.78
627846--627904	28	2.1	28	93	3	100	81	0	16	1	0.78
627846--627926	11	7.5	11	71	20	73	80	0	18	1	0.78
627857--627906	9	5.4	9	83	4	64	80	0	18	2	0.82
630965--631147	97	1.9	98	79	5	210	38	9	9	42	1.70
632625--632736	3	37.3	3	94	0	197	63	0	2	33	1.09
633057--633586	112	4.7	112	92	3	837	29	18	13	38	1.89
633056--633586	225	2.3	223	92	1	803	29	18	13	38	1.89
633540--633612	20	3.4	23	64	30	61	15	26	9	49	1.74
633523--633626	41	2.6	40	96	3	199	18	24	9	48	1.78
634383--635090	330	2.1	333	95	2	1275	37	24	13	25	1.92
634383--635090	83	8.6	83	97	1	1273	37	24	13	25	1.92
635885--635924	16	2.5	16	88	8	55	52	10	7	30	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
639785--639821	18	2.0	19	89	5	58	62	0	13	24	1.31
649084--649177	3	31.3	3	93	0	161	62	0	3	34	1.11
650864--651263	54	7.4	54	86	2	545	34	18	17	30	1.93
651580--651634	20	2.6	23	83	11	64	25	21	12	40	1.89
657694--657983	54	5.4	53	82	4	339	33	16	19	30	1.94
659241--659297	28	2.0	28	96	0	105	24	21	22	31	1.98
679970--680009	19	2.0	20	86	13	57	5	20	5	70	1.26
686243--686289	20	2.4	19	86	13	60	51	8	14	25	1.71
699867--699947	22	3.5	24	88	5	89	50	16	3	29	1.62
699890--699947	22	2.6	22	97	0	107	51	15	1	31	1.53
700291--700920	54	11.8	54	86	5	809	34	21	18	25	1.96
700304--700889	262	2.2	262	86	4	802	34	21	18	25	1.96
700312--700920	316	1.9	316	89	1	943	34	21	18	25	1.96
701377--701429	24	2.2	24	100	0	106	37	3	9	49	1.53
707486--707829	54	6.4	54	87	4	435	34	22	17	26	1.96
709660--709697	20	1.9	20	89	10	60	36	15	15	31	1.90
712691--712730	20	2.0	20	95	0	71	35	17	15	32	1.91
713649--713695	20	2.3	21	96	3	87	29	8	44	17	1.78
740701--740782	42	2.0	42	85	0	110	34	21	14	29	1.93
741417--741558	44	3.2	45	87	4	200	28	22	16	32	1.96
744660--744732	20	3.7	20	81	3	85	26	28	21	23	1.99
744654--744740	40	2.2	39	83	6	113	32	24	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
744667--744753	40	2.2	41	81	8	99	33	26	19	20	1.97
745462--745507	20	2.4	20	82	17	62	32	19	26	21	1.97
745561--745605	19	2.3	20	84	3	56	28	17	26	26	1.98
746853--746982	30	4.3	30	98	0	242	30	17	17	33	1.94
748780--748911	47	2.9	46	82	11	166	33	20	6	40	1.77
749791--749835	14	3.2	14	77	0	54	37	0	0	62	0.96
750457--750715	21	12.4	21	77	12	241	21	20	21	36	1.95
750457--750673	42	5.2	40	86	5	290	21	20	21	36	1.95
750446--750673	84	2.7	82	91	4	375	21	20	21	35	1.96
750499--750722	61	3.6	61	82	10	258	21	20	22	34	1.96

Tables:   1   2   3   4