genome.fa.s8935.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008935.1 Hibiscus syriacus cultivar Beakdansim tig00112253_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1775090

Tables:   1   2   3   4   5   6   7   8   9   

This is table  4  of  9  ( 1015 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
794888--794934	18	2.5	18	82	6	58	40	2	2	55	1.24
794882--794930	25	2.0	25	92	8	82	40	2	4	53	1.32
794888--794934	13	3.1	14	75	24	51	40	2	2	55	1.24
796334--796379	6	7.7	6	90	9	76	17	0	0	82	0.67
803190--803273	44	1.9	44	95	0	150	17	17	4	59	1.54
808044--808106	7	8.6	7	76	20	58	41	3	3	52	1.33
808046--808239	25	8.0	24	66	16	71	39	5	6	48	1.52
808130--808211	28	2.8	30	73	12	80	40	6	9	43	1.62
808199--808255	18	3.3	18	76	9	57	38	5	3	52	1.41
809682--809724	21	2.0	21	82	8	52	25	6	0	67	1.15
811868--811908	20	2.0	20	90	4	64	17	14	31	36	1.90
813996--814045	22	2.3	21	83	6	64	12	12	8	68	1.40
818196--818227	14	2.2	15	94	5	57	65	0	9	25	1.22
824900--824939	21	2.0	21	85	5	55	32	25	7	35	1.84
834532--834583	2	26.0	2	100	0	104	50	0	0	50	1.00
835648--835699	24	2.2	24	89	0	77	36	21	21	21	1.95
835689--835734	23	2.0	23	86	0	65	39	23	17	19	1.92
839870--839944	37	2.1	37	94	2	134	41	14	10	33	1.81
844415--844444	15	2.0	15	100	0	60	13	46	26	13	1.80
844865--844938	35	2.1	37	92	5	125	40	14	10	33	1.81
847072--847116	21	2.1	21	91	0	72	11	13	40	35	1.80
851197--851257	24	2.5	25	73	5	63	67	1	1	29	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
853232--853272	19	2.2	18	91	4	64	36	7	2	53	1.42
853665--853701	17	2.1	18	90	5	58	37	0	0	62	0.96
853697--853726	15	2.1	14	93	6	51	16	0	6	76	0.99
853740--853773	2	17.0	2	100	0	68	50	0	0	50	1.00
855015--855101	41	2.1	41	83	8	106	33	14	11	40	1.83
859007--859074	20	3.4	18	75	16	64	35	1	8	54	1.41
859023--859095	21	3.5	21	78	10	87	41	0	6	52	1.28
859007--859095	41	2.2	41	93	2	153	38	1	7	52	1.38
859007--859105	41	2.5	40	90	5	137	37	1	7	54	1.34
859290--859373	30	2.7	31	90	5	127	41	9	2	46	1.49
860772--860829	20	2.7	22	84	15	77	13	24	22	39	1.90
862349--862389	12	3.4	13	77	16	52	17	17	14	51	1.77
862325--862385	24	2.5	24	86	0	77	21	13	18	47	1.82
862535--862573	20	2.0	20	89	0	60	7	30	35	25	1.84
867463--867498	13	2.8	13	95	0	63	16	16	5	61	1.53
872883--872927	20	2.2	20	84	0	54	40	13	15	31	1.86
885418--885455	2	19.0	2	100	0	76	50	0	0	50	1.00
896830--896864	18	1.9	18	94	0	61	48	8	11	31	1.69
900730--900767	20	1.9	20	94	0	67	10	26	39	23	1.87
904025--904063	16	2.5	16	95	4	71	23	10	12	53	1.69
907552--907612	30	2.0	30	93	0	104	42	16	14	26	1.87
915284--915339	24	2.3	24	78	6	69	67	1	5	25	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
916263--916338	33	2.2	35	84	9	95	43	1	9	46	1.44
916284--916333	23	2.1	24	85	7	66	46	0	10	44	1.37
916298--916373	37	2.1	37	82	0	89	42	1	6	50	1.37
916345--916383	19	2.1	19	100	0	78	38	5	10	46	1.60
916369--916541	37	4.6	37	75	21	150	46	2	5	46	1.38
916379--916537	76	2.1	73	86	11	225	46	1	5	46	1.35
916391--916475	43	2.0	42	81	9	100	45	2	4	47	1.36
916511--916600	27	3.2	28	76	15	80	45	2	5	46	1.38
916527--916580	15	3.6	16	75	14	51	46	1	7	44	1.42
916526--916581	14	3.7	15	75	13	53	46	3	7	42	1.48
917500--917530	13	2.3	14	94	5	55	58	3	38	0	1.15
918034--918087	22	2.5	21	80	11	65	29	3	1	64	1.21
918115--918152	18	2.0	20	90	10	62	18	5	2	73	1.14
920495--920853	180	2.0	179	95	3	652	26	25	22	25	2.00
923480--924383	84	11.0	82	76	6	780	29	25	19	24	1.99
923516--924412	162	5.5	165	83	5	829	29	25	19	24	1.98
923765--924383	328	1.9	326	85	4	861	29	25	20	24	1.99
924813--925012	36	5.5	36	80	8	226	46	3	6	44	1.46
925024--925090	35	1.9	35	87	6	100	52	1	2	43	1.25
925060--925184	13	9.5	13	69	18	55	48	2	4	44	1.34
925078--925130	15	3.6	14	80	10	54	45	1	7	45	1.42
926080--926105	13	2.0	13	100	0	52	53	0	46	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
930348--930387	15	2.6	16	88	4	64	12	30	30	27	1.93
930440--930496	15	3.7	15	79	9	69	15	26	35	22	1.94
930428--930496	32	2.2	32	91	0	111	17	26	33	23	1.96
936394--936566	83	2.1	83	80	8	192	41	9	9	39	1.70
938127--938186	3	19.7	3	83	10	77	66	0	1	31	1.01
938405--938705	122	2.5	122	92	0	487	23	19	15	40	1.90
938617--939043	113	3.6	113	75	14	428	28	18	13	39	1.89
938768--938806	19	2.1	19	95	0	69	10	20	12	56	1.65
938671--938919	132	1.9	133	91	2	412	27	18	13	40	1.88
942061--942101	14	2.7	16	81	11	50	29	2	9	58	1.43
942117--942159	15	2.9	15	86	6	61	53	0	16	30	1.43
945402--945461	27	2.2	27	79	5	68	65	1	3	30	1.19
945953--945996	23	1.9	23	85	0	61	47	0	4	47	1.22
946290--946314	3	8.3	3	100	0	50	64	0	0	36	0.94
946340--946415	36	2.1	37	83	11	95	65	6	1	26	1.24
947665--947722	29	2.0	29	82	0	71	12	12	36	39	1.80
947739--947818	3	26.7	3	80	14	94	67	0	1	31	0.99
950093--950133	20	2.0	20	100	0	82	24	14	24	36	1.93
950688--950819	70	1.9	69	84	1	174	26	15	28	28	1.96
951411--951597	50	3.8	48	84	6	207	21	16	15	47	1.83
951411--951597	99	1.9	98	85	1	257	21	16	15	47	1.83
951392--951629	51	4.7	51	82	4	268	23	14	15	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
955209--955243	18	1.9	18	94	0	61	14	20	34	31	1.92
955229--955288	23	2.6	23	97	0	111	13	28	28	30	1.94
959707--959741	18	1.9	18	94	0	61	54	2	2	40	1.30
962688--962793	29	3.5	28	74	13	95	42	2	7	47	1.46
962876--962945	29	2.3	30	83	16	90	51	7	7	34	1.57
963320--963584	136	1.9	136	87	4	392	30	22	11	35	1.90
964925--964975	24	2.1	24	100	0	102	23	19	13	43	1.87
973794--973879	41	2.1	41	100	0	172	34	16	9	39	1.80
974935--975110	88	2.0	88	100	0	352	27	22	20	29	1.99
988516--988579	22	2.9	22	88	0	101	25	20	23	31	1.98
989245--989301	20	2.8	20	94	0	96	22	36	15	24	1.94
994637--994678	22	1.9	22	90	0	66	26	21	21	30	1.98
997251--997335	41	2.0	42	82	8	102	16	7	40	36	1.76
1003088--1003140	20	2.7	20	96	0	97	20	15	35	28	1.93
1005906--1005939	13	2.6	13	100	0	68	35	8	23	32	1.86
1006651--1006698	20	2.4	20	96	0	87	37	14	8	39	1.76
1013245--1013321	36	2.1	36	100	0	154	45	22	5	27	1.73
1014447--1014542	39	2.5	39	84	6	124	40	10	16	32	1.83
1015797--1015824	6	4.7	6	100	0	56	0	64	17	17	1.30
1024678--1024723	22	2.1	22	95	0	83	10	21	4	63	1.44
1025241--1025282	21	2.0	22	86	9	61	35	19	0	45	1.50
1032765--1032818	24	2.2	24	96	0	99	31	14	22	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1032765--1032830	24	2.7	24	90	2	96	28	13	27	30	1.94
1035136--1035181	24	1.9	24	90	0	74	26	4	30	39	1.75
1042943--1043123	73	2.4	73	83	3	209	25	18	25	29	1.98
1043754--1043805	20	2.6	20	82	14	63	57	25	0	17	1.40
1044998--1045027	12	2.5	12	94	0	51	16	0	50	33	1.46
1045343--1045398	23	2.6	22	88	8	80	32	16	26	25	1.96
1050317--1050482	74	2.2	74	85	6	217	23	19	25	30	1.98
1051858--1051923	27	2.4	28	78	9	75	66	4	1	27	1.20
1051996--1052418	30	12.6	35	82	10	149	41	9	4	44	1.57
1052047--1052408	33	11.0	31	81	12	309	41	9	3	45	1.54

Tables:   1   2   3   4   5   6   7   8   9