Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008935.1 Hibiscus syriacus cultivar Beakdansim tig00112253_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1775090

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 1015 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1717892--1717954
22
2.8
23
87
4
92
31
6
23
38
1.80
1718370--1718434
21
3.2
20
77
14
69
35
4
21
38
1.74
1718782--1718825
21
2.1
21
87
4
63
43
11
11
34
1.77
1718840--1718912
23
3.2
23
96
0
128
34
8
20
36
1.83
1723118--1723144
3
9.0
3
100
0
54
0
0
33
66
0.92
1724218--1724293
30
2.5
31
82
14
81
18
11
10
59
1.60
1726887--1726976
6
13.4
7
76
14
68
16
20
12
51
1.76
1726887--1726971
27
3.1
27
94
0
152
16
20
12
50
1.77
1727035--1727384
175
2.0
176
99
0
693
32
20
21
25
1.98
1729420--1729449
16
1.9
15
93
6
51
86
6
6
0
0.70
1731110--1731177
24
2.9
24
78
14
79
36
13
4
45
1.63
1731299--1731410
32
3.6
32
89
5
160
30
16
20
33
1.94
1731292--1731428
62
2.2
60
78
10
150
32
14
21
31
1.93
1731537--1731640
34
3.1
34
92
0
181
33
20
8
37
1.83
1731541--1731661
34
3.6
34
89
0
179
32
21
10
35
1.88
1731826--1731969
76
1.9
74
82
2
180
33
15
13
37
1.87
1731984--1732200
36
6.0
36
93
1
355
25
23
14
36
1.93
1732045--1732109
21
3.4
21
64
24
61
23
26
13
36
1.92
1731965--1732287
36
8.6
39
87
4
235
26
21
16
35
1.94
1732309--1732646
43
7.6
43
81
11
369
28
14
28
29
1.95
1732501--1732694
55
3.8
53
74
18
196
28
15
26
28
1.96
1732466--1732683
98
2.2
96
88
4
321
28
15
26
29
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1732696--1733014
90
3.5
90
90
0
521
24
18
22
34
1.96
1733303--1733329
6
4.5
6
100
0
54
33
51
14
0
1.43
1734689--1734729
15
2.8
15
85
10
50
36
4
7
51
1.51
1734917--1734950
18
1.9
18
88
5
52
82
0
2
14
0.79
1735711--1735751
9
4.7
9
82
11
50
12
0
31
56
1.36
1736204--1736255
20
2.5
21
78
9
54
73
1
3
21
1.10
1736279--1736648
36
10.6
36
77
13
253
44
7
3
45
1.48
1736324--1736646
36
9.3
33
78
16
273
44
7
3
44
1.48
1736439--1736501
28
2.2
28
88
5
90
41
6
6
46
1.55
1736360--1736605
132
1.8
136
84
10
346
44
6
3
45
1.44
1736668--1736698
2
15.5
2
100
0
62
51
0
0
48
1.00
1737235--1738403
84
13.9
84
87
1
1574
24
18
22
35
1.96
1741895--1741941
15
3.2
14
85
8
58
76
2
8
12
1.09
1741902--1741955
17
3.4
16
85
7
74
79
1
9
9
1.00
1742892--1742938
6
7.7
6
97
2
85
68
0
0
31
0.90
1745502--1745590
30
3.0
30
91
0
133
2
37
0
60
1.09
1751621--1751680
3
18.3
3
81
10
57
60
1
36
1
1.17
1751621--1751678
22
2.5
24
88
8
84
58
1
37
1
1.18
1753376--1753420
23
2.0
23
82
8
56
37
4
0
57
1.19
1759434--1759505
25
3.1
24
71
15
71
27
0
11
61
1.30
1759572--1759604
15
2.2
15
89
10
50
48
0
0
51
1.00
1759570--1759617
17
2.9
16
82
14
53
52
0
0
47
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1759627--1759661
17
2.1
17
88
0
52
54
5
2
37
1.39
1761612--1761715
2
56.5
2
67
22
50
44
4
2
48
1.39
1761603--1761710
23
5.0
22
69
15
64
44
4
3
47
1.41
1761675--1761710
9
3.9
9
92
7
63
44
2
0
52
1.15
1761612--1761710
30
3.2
31
73
17
80
44
4
3
48
1.37
1761676--1761720
18
2.5
19
86
10
60
42
6
0
51
1.28
1762796--1762839
21
2.0
22
86
4
63
13
0
6
79
0.92
1766906--1766949
21
2.1
21
86
0
61
38
6
38
15
1.75
1769012--1769049
20
1.9
20
89
10
60
21
2
0
76
0.91
1769319--1769363
22
2.0
22
82
0
54
11
11
4
73
1.23
1773270--1773309
18
2.2
18
86
8
55
22
2
5
70
1.19

Tables:   1   2   3   4   5   6   7   8   9

The End!