genome.fa.s8937.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008937.1 Hibiscus syriacus cultivar Beakdansim tig00112255_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  635368

Tables:   1   2   3   4   

This is table  4  of  4  ( 409 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
540201--540260	2	30.0	2	100	0	120	50	0	0	50	1.00
540545--540570	2	13.0	2	100	0	52	50	0	0	50	1.00
541033--541123	3	30.3	3	100	0	182	32	0	0	67	0.91
546180--546215	14	2.5	15	86	9	56	41	0	0	58	0.98
546161--546315	79	2.0	79	92	0	256	40	3	6	49	1.47
546308--546353	23	2.0	23	100	0	92	34	21	4	39	1.73
548983--549022	12	3.5	12	81	18	50	22	0	0	77	0.77
548984--549020	14	2.7	14	80	19	51	24	0	0	75	0.80
551085--551112	2	14.0	2	100	0	56	50	0	0	50	1.00
551235--551272	20	1.9	20	88	0	58	60	10	5	23	1.50
560138--560386	77	3.2	77	98	0	471	38	14	32	14	1.86
560969--561419	227	2.0	226	99	0	893	26	21	30	22	1.99
565745--565829	34	2.5	34	81	11	93	62	12	2	22	1.42
568096--568155	24	2.6	23	77	17	61	66	1	0	31	1.01
568699--568764	33	2.0	34	96	3	125	39	7	3	50	1.46
581045--581107	23	2.6	25	81	18	80	73	1	19	6	1.13
583190--583287	42	2.4	40	79	6	106	25	22	22	29	1.99
583190--583313	41	3.0	42	77	3	126	25	23	22	28	1.99
583102--583724	231	2.7	231	90	2	973	31	16	17	33	1.93
583710--584350	37	17.2	37	72	9	397	35	21	17	24	1.95
583784--584312	116	4.7	116	84	6	620	34	22	17	24	1.96
602988--603032	17	2.7	16	80	10	54	48	6	11	33	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
605608--605642	17	2.1	17	89	5	54	45	8	14	31	1.75
608815--608953	63	2.2	63	77	11	142	34	20	19	25	1.96
609315--609590	117	2.4	117	86	2	385	35	9	23	31	1.87
609314--609557	58	4.2	59	78	7	248	35	9	24	30	1.87
610123--610166	21	2.1	21	91	0	70	31	22	20	25	1.98
616409--616684	117	2.4	117	85	3	360	36	9	22	31	1.86
616408--616632	58	3.8	58	76	8	204	36	9	23	31	1.86
616400--616719	59	5.5	60	73	11	231	35	10	23	30	1.88
616400--616757	59	6.1	59	71	12	193	35	10	23	30	1.89
617325--617351	14	1.9	14	100	0	54	22	25	7	44	1.79
617904--617982	23	3.6	23	76	11	94	58	10	12	18	1.62
617899--617982	43	1.9	44	95	2	152	59	9	11	19	1.59
617899--617994	43	2.2	42	89	5	147	61	8	10	19	1.53
618030--618090	29	2.1	29	88	8	90	60	3	16	19	1.49
618217--618275	30	2.0	30	90	3	93	45	0	20	33	1.51
621015--621066	22	2.2	24	86	6	72	40	15	19	25	1.90
621791--621828	16	2.5	15	84	12	51	65	0	5	28	1.14
621965--622012	18	2.6	18	83	6	60	37	10	22	29	1.88
622005--622117	20	5.6	20	75	8	86	31	13	22	32	1.92
622029--622118	40	2.2	41	80	7	103	32	13	21	33	1.92
622126--622172	20	2.3	20	85	0	67	21	19	21	38	1.94
623081--623123	14	3.0	14	90	6	68	11	34	0	53	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
625650--625688	20	2.0	20	89	0	60	38	7	17	35	1.79
625742--625781	20	2.0	20	95	0	71	30	17	20	32	1.95
632065--632122	23	2.7	21	80	15	64	24	25	24	25	2.00
632078--632121	23	1.9	23	90	0	70	22	25	25	27	2.00
633074--635368	856	2.7	865	92	3	3842	30	15	25	28	1.95

Tables:   1   2   3   4

The End!