genome.fa.s8979.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008979.1 Hibiscus syriacus cultivar Beakdansim tig00112339_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1115631

Tables:   1   2   3   4   5   6   

This is table  1  of  6  ( 693 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7329--7391	33	2.0	32	81	6	74	49	6	0	44	1.28
8493--8531	13	2.9	14	84	7	53	0	33	12	53	1.39
8989--9128	3	46.7	3	92	0	235	62	0	2	35	1.07
16731--16840	41	2.7	41	86	0	157	27	24	20	27	1.99
16824--16935	47	2.4	47	88	5	156	25	23	17	33	1.97
17175--17340	84	2.0	83	90	1	260	43	15	13	27	1.84
26874--26911	16	2.4	16	90	0	58	21	28	15	34	1.94
27023--27063	17	2.4	17	95	0	73	46	0	7	46	1.30
26985--27115	67	1.9	68	84	9	178	44	1	5	48	1.34
27033--27131	52	1.9	52	97	0	189	40	2	6	51	1.38
29557--29695	13	11.2	12	70	23	58	51	0	1	46	1.09
29562--29699	6	22.3	6	68	21	56	52	0	1	46	1.09
29582--29701	31	3.7	33	75	14	117	52	0	1	45	1.10
29585--29779	65	3.0	65	77	13	161	48	1	4	45	1.30
29657--29693	14	2.9	13	85	14	51	62	0	0	37	0.96
29562--29707	31	4.5	31	70	16	100	52	0	1	45	1.14
29654--29766	31	3.5	31	74	17	88	52	2	3	41	1.33
29717--29778	14	4.4	14	74	11	54	41	3	8	46	1.49
29828--29902	21	3.6	21	72	17	66	48	6	5	40	1.52
29934--30017	13	6.8	13	66	17	54	40	10	5	42	1.64
30064--30117	21	2.6	21	88	2	83	25	1	22	50	1.59
30188--30243	30	1.9	28	85	7	76	44	5	1	48	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30298--30342	21	2.1	21	83	0	54	22	0	26	51	1.49
30759--30810	21	2.5	21	81	3	61	38	19	25	17	1.93
30778--30877	41	2.4	42	78	5	114	37	21	20	22	1.95
30799--30913	20	5.7	20	77	5	79	35	22	17	24	1.95
31078--31121	22	2.0	22	90	0	70	20	43	15	20	1.88
31386--31428	20	2.2	20	95	0	77	9	18	18	53	1.70
32748--32792	18	2.5	18	88	0	72	26	44	15	13	1.83
33231--33323	21	4.5	21	78	4	100	39	18	24	17	1.91
33231--33323	41	2.3	41	100	0	186	39	18	24	17	1.91
33250--33384	41	3.3	41	82	6	132	38	20	21	19	1.94
33312--33406	20	4.7	20	80	2	91	34	24	17	23	1.96
33594--33637	22	2.0	22	90	0	70	22	45	13	18	1.84
33902--33944	20	2.2	20	95	0	77	9	18	18	53	1.70
34302--34576	4	68.8	4	98	0	532	50	24	0	25	1.53
34765--34826	19	3.3	19	77	6	72	24	30	0	45	1.54
34955--34993	13	2.7	15	76	15	55	41	5	5	48	1.47
34923--34978	24	2.5	22	75	16	60	41	5	3	50	1.43
34964--34997	13	2.6	13	90	0	50	44	5	2	47	1.42
35015--35077	28	2.2	29	86	8	85	46	1	1	50	1.20
35044--35078	18	1.9	18	94	0	61	45	0	0	54	0.99
36709--36749	3	14.3	3	85	10	59	73	0	0	26	0.84
39522--39811	21	14.0	21	72	13	217	21	18	24	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39547--39808	42	6.3	41	93	0	427	20	18	24	36	1.95
39901--39927	6	4.5	6	100	0	54	33	51	14	0	1.43
40539--40692	21	7.4	21	63	19	81	38	22	18	21	1.93
40535--40753	42	5.3	41	89	4	325	37	23	17	21	1.94
40560--40835	61	4.5	60	77	8	279	35	26	18	20	1.95
40535--40752	82	2.6	82	91	1	346	37	23	17	21	1.94
40560--40839	21	13.6	21	72	10	220	35	26	18	20	1.95
40848--40900	21	2.5	21	90	0	79	20	22	28	28	1.99
41576--41614	20	2.0	20	94	0	69	53	12	5	28	1.60
43615--43702	32	2.8	31	71	8	79	31	19	18	30	1.95
44037--44085	18	2.5	20	77	16	57	32	24	2	40	1.67
48705--48753	18	2.5	20	77	16	57	32	24	2	40	1.67
49564--49613	19	2.6	19	100	0	100	22	36	16	26	1.94
53049--53154	31	3.4	32	78	8	110	31	18	18	31	1.96
53495--53537	18	2.3	18	84	8	50	34	20	2	41	1.65
59566--59613	18	2.7	18	93	0	78	29	27	16	27	1.97
64596--64662	21	3.2	21	97	0	125	29	14	8	46	1.76
64669--64756	8	9.9	8	69	20	50	39	12	2	45	1.55
64672--64750	28	2.8	28	98	0	149	40	12	2	44	1.56
64672--64756	17	4.7	17	69	18	55	38	12	2	45	1.55
65166--65246	31	2.6	31	80	7	101	37	3	7	51	1.48
65420--65489	29	2.3	30	83	9	90	22	10	11	55	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68541--68591	22	2.3	22	90	6	77	31	21	27	19	1.97
77166--77211	23	2.0	23	91	0	74	28	26	23	21	1.99
77189--77493	149	2.0	149	98	0	592	35	20	15	28	1.94
78837--78958	64	1.9	66	89	6	196	27	21	16	35	1.94
82843--82872	3	9.7	3	92	7	51	63	0	3	33	1.11
82837--82872	13	2.8	13	91	4	56	61	0	5	33	1.19
83067--83587	113	4.6	112	91	0	781	32	17	22	28	1.96
83514--83630	48	2.4	48	97	2	218	33	15	22	29	1.94
84758--84843	15	5.8	15	73	10	54	9	16	1	73	1.15
84766--84809	22	2.0	23	86	4	63	6	18	0	75	1.02
84758--84831	31	2.5	28	82	10	78	9	16	1	72	1.16
92019--92048	11	2.7	11	89	0	51	46	10	20	23	1.80
98110--98139	3	9.7	3	92	7	51	63	0	3	33	1.11
98104--98139	13	2.8	13	91	4	56	61	0	5	33	1.19
99901--100030	69	1.9	69	95	3	235	18	32	19	30	1.96
103061--103103	22	2.0	22	90	9	70	46	2	27	23	1.64
115919--116307	138	2.8	136	82	6	428	42	14	13	29	1.84
117807--117857	23	2.1	25	82	7	61	56	0	7	35	1.28
118196--118240	19	2.3	20	96	3	83	22	37	0	40	1.54
118350--118426	2	38.5	2	89	5	120	51	1	1	45	1.17
118860--118924	2	32.5	2	90	6	105	46	1	1	50	1.20
118994--119031	20	2.0	20	89	5	60	36	2	36	23	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119260--119347	7	12.6	7	80	9	72	50	28	0	21	1.49
119261--119343	21	4.0	21	81	6	105	48	30	0	21	1.51
119260--119347	28	3.2	26	82	9	95	50	28	0	21	1.49
119365--119409	23	1.9	24	95	4	83	51	4	2	42	1.34
119619--119661	18	2.4	18	88	0	59	32	6	2	58	1.38
119629--119686	18	3.4	18	83	11	77	32	6	3	56	1.42
119670--119826	13	11.4	13	68	16	84	43	5	5	45	1.47
119670--119738	28	2.6	26	80	8	84	43	7	5	43	1.56
119721--119873	18	8.2	18	73	16	116	43	2	5	47	1.41
119678--119869	96	2.0	98	94	2	343	43	4	5	46	1.46
128363--128430	14	4.9	14	74	13	59	48	2	14	33	1.59
128368--128431	29	2.3	29	84	10	80	46	4	14	34	1.65
128811--128988	30	6.7	26	69	24	90	50	1	1	47	1.15
128804--128916	29	3.8	29	80	16	117	51	1	0	46	1.11
128807--128916	30	3.8	28	78	19	109	50	1	0	47	1.11
128928--128974	22	2.1	23	88	4	69	53	0	2	44	1.12
128936--128979	22	2.0	22	82	8	54	54	0	2	43	1.12
129203--129286	43	2.0	43	92	2	143	47	17	16	17	1.83
133957--134075	51	2.4	51	90	4	179	28	5	24	42	1.76
133957--134089	51	2.6	50	84	8	146	28	4	23	43	1.73
136444--136562	24	5.0	24	87	4	177	26	14	20	39	1.90
136460--136522	12	5.2	12	70	21	51	25	14	22	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136444--136562	48	2.5	48	91	2	195	26	14	20	39	1.90
137465--137507	22	2.0	22	86	9	61	67	2	0	30	1.03
144649--144789	64	2.2	63	82	5	158	36	18	17	26	1.93
145265--145482	103	2.1	103	95	0	391	25	13	24	37	1.92
145499--145561	23	2.7	23	85	0	81	20	25	26	26	1.99
151630--151790	64	2.5	63	82	7	173	32	18	21	27	1.96
152241--152458	103	2.1	103	96	0	400	25	13	24	36	1.92
152475--152537	23	2.7	23	80	4	74	23	26	23	25	2.00
158581--158627	24	1.9	25	82	4	60	31	8	10	48	1.68
158907--158964	30	2.0	30	86	3	82	51	1	6	39	1.39

Tables:   1   2   3   4   5   6