genome.fa.s8979.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008979.1 Hibiscus syriacus cultivar Beakdansim tig00112339_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1115631

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 693 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1039377--1039563	19	10.6	19	77	18	208	44	18	21	15	1.86
1039363--1039525	32	4.7	34	80	15	183	46	18	21	14	1.84
1039377--1039525	70	2.1	72	92	5	250	46	18	20	14	1.84
1039363--1039563	52	3.9	52	84	12	263	44	18	21	14	1.86
1039363--1039563	103	2.0	101	84	11	266	44	18	21	14	1.86
1039572--1039669	19	5.4	19	84	13	143	14	22	17	45	1.84
1039553--1039669	53	2.2	53	96	1	218	13	24	17	43	1.86
1039776--1039812	14	2.6	14	91	0	65	45	21	0	32	1.52
1041766--1041822	14	3.7	14	77	20	60	45	22	21	10	1.82
1041747--1041838	33	2.8	33	93	1	159	46	21	20	10	1.81
1041710--1041843	19	7.6	19	77	16	119	45	23	19	11	1.82
1041839--1041967	19	7.3	19	74	17	116	9	17	27	45	1.78
1041839--1041930	33	2.8	33	91	3	141	8	18	27	45	1.78
1042015--1042570	93	6.1	93	97	1	1027	46	19	12	22	1.83
1044242--1044356	33	3.5	33	96	0	212	46	19	22	11	1.81
1044264--1044361	19	5.7	19	68	22	81	44	20	22	12	1.84
1044250--1044339	14	5.7	14	67	23	54	44	21	23	11	1.84
1044373--1044429	14	3.7	14	75	20	60	8	24	22	43	1.81
1044357--1044437	33	2.5	33	95	0	144	8	22	22	46	1.78
1044414--1044489	21	3.7	21	83	3	109	11	25	17	46	1.82
1044413--1044490	41	1.9	41	97	0	147	12	25	16	44	1.83
1044569--1044639	33	2.2	33	92	0	115	47	18	22	11	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1044819--1044872	21	2.5	22	78	3	65	20	16	38	24	1.92
1045017--1045170	20	7.7	20	81	7	168	18	18	26	37	1.93
1045016--1045170	40	3.8	40	82	4	186	18	18	26	37	1.93
1045157--1045239	21	4.0	21	73	6	78	25	16	24	33	1.96
1045137--1045235	42	2.4	43	77	11	100	21	18	23	37	1.94
1047927--1048016	38	2.4	37	83	10	105	50	0	0	50	1.00
1047968--1048016	17	3.0	17	76	11	57	48	0	0	51	1.00
1047933--1048016	42	2.0	40	90	4	132	50	0	0	50	1.00
1049679--1049720	22	1.9	22	95	0	75	38	11	28	21	1.89
1049734--1049780	2	23.5	2	100	0	94	48	0	0	51	1.00
1058559--1058607	23	2.2	22	85	10	64	34	14	14	36	1.86
1065066--1065108	16	2.8	15	89	3	59	16	62	4	16	1.48
1065066--1065110	15	2.9	16	90	3	65	15	60	6	17	1.56
1065305--1065410	29	3.6	28	80	8	104	39	9	12	38	1.75
1069214--1069251	13	2.8	14	92	4	60	18	0	39	42	1.50
1069213--1069264	14	3.8	14	85	7	63	17	0	36	46	1.48
1069370--1069434	34	1.9	34	87	0	94	16	20	38	24	1.93
1069954--1070588	127	5.0	127	85	4	676	25	17	28	28	1.98
1070417--1070608	40	4.4	44	74	12	173	22	14	33	29	1.93
1070398--1070566	46	3.9	46	73	15	169	24	15	32	27	1.95
1070018--1070672	127	5.1	128	86	2	547	24	17	29	28	1.97
1070736--1070863	68	2.0	66	84	7	172	37	12	17	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1070754--1070864	35	3.3	35	77	13	126	37	12	18	31	1.88
1070971--1071055	33	2.6	33	75	7	91	35	11	18	34	1.88
1071441--1071500	20	3.3	20	62	33	53	35	6	23	35	1.81
1071374--1071527	34	4.5	34	91	0	245	33	7	23	35	1.84
1071821--1071885	24	2.9	23	74	14	64	46	4	13	35	1.64
1072702--1072768	6	12.0	6	80	10	72	1	16	1	80	0.86
1072702--1072766	16	4.0	15	84	15	85	1	16	1	80	0.88
1072702--1072765	33	1.9	34	90	3	103	1	17	1	79	0.89
1072702--1072787	11	7.6	11	76	5	73	1	17	3	77	0.96
1072704--1072777	39	2.0	38	86	7	107	1	16	2	79	0.91
1072713--1072796	22	3.7	21	77	13	78	1	17	3	77	0.98
1073969--1074011	13	3.2	13	78	18	52	53	11	20	13	1.71
1074726--1074786	32	1.9	32	89	0	95	59	11	13	16	1.62
1077008--1077045	13	2.8	14	92	4	60	18	0	39	42	1.50
1077007--1077058	14	3.8	14	85	7	63	17	0	36	46	1.48
1077457--1077507	24	2.1	24	96	0	93	33	23	15	27	1.95
1079278--1079307	2	15.0	2	92	0	51	46	0	3	50	1.18
1080037--1080084	13	3.5	13	76	15	51	54	2	4	39	1.32
1080859--1080899	7	5.9	7	78	21	50	41	24	29	4	1.75
1080853--1080899	16	3.2	16	77	22	66	38	23	29	8	1.84
1080872--1080974	48	2.1	48	87	0	143	38	20	19	21	1.93
1080950--1081024	31	2.5	31	84	4	91	42	17	14	25	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1085910--1085969	23	2.7	23	80	10	72	16	23	38	21	1.93
1089776--1089815	21	1.9	21	85	10	55	35	10	2	52	1.48
1094652--1094699	24	2.0	24	91	0	78	45	4	20	29	1.70
1094967--1095007	17	2.4	17	95	0	73	9	34	36	19	1.85
1095786--1095842	27	2.1	27	100	0	114	43	3	28	24	1.70
1097687--1097751	28	2.3	28	100	0	130	12	13	16	56	1.66
1099611--1099646	4	9.0	4	87	0	54	69	0	2	27	1.02
1100790--1100849	7	8.9	7	83	10	63	75	3	1	20	1.04
1100788--1100849	18	3.4	18	78	10	65	75	3	1	19	1.02
1101850--1102199	82	4.3	80	81	4	439	24	22	25	28	1.99
1101873--1102197	165	2.0	166	89	1	501	24	22	24	28	2.00
1102398--1103657	105	12.0	105	92	1	2008	23	18	25	32	1.97
1102398--1103657	211	6.0	210	92	1	2008	23	18	25	32	1.97
1107482--1107517	14	2.6	14	90	0	54	75	2	0	22	0.94
1107477--1107523	8	5.8	8	82	9	51	74	2	0	23	0.93
1107474--1107546	11	6.6	11	76	14	53	69	1	5	23	1.17
1108825--1108883	6	9.1	7	78	14	56	74	3	1	20	1.05
1108823--1108883	13	4.8	13	75	13	56	75	3	1	19	1.03
1108963--1109037	33	2.3	33	86	8	102	42	8	8	41	1.63
1108893--1109220	35	9.3	36	71	14	145	44	6	5	42	1.53
1109578--1109620	11	3.6	11	80	17	50	76	0	4	18	0.95
1109581--1109623	17	2.5	17	85	14	54	76	0	4	18	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1114162--1114233	9	7.4	9	73	14	63	16	23	29	30	1.96
1114162--1114250	19	4.6	20	84	8	96	19	24	28	28	1.98
1114243--1114296	16	3.5	15	85	14	67	18	37	27	16	1.93
1114274--1114320	7	6.9	7	85	4	69	17	29	29	23	1.97
1114285--1114317	13	2.5	13	95	5	57	15	30	30	24	1.95

Tables:   1   2   3   4   5   6

The End!