genome.fa.s8981.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008981.1 Hibiscus syriacus cultivar Beakdansim tig00112343_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1473337

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 776 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
178797--179298	84	6.0	83	80	4	481	24	20	25	30	1.99
179357--179445	35	2.6	35	94	1	153	31	8	19	40	1.82
179531--179646	36	3.2	36	92	1	187	38	12	19	28	1.89
180323--180446	43	2.9	43	91	0	203	22	18	29	29	1.97
181552--181787	95	2.5	95	85	7	307	33	15	16	33	1.91
183911--184148	95	2.6	95	83	8	291	31	18	16	32	1.94
185318--186060	84	8.9	84	75	8	599	31	23	19	26	1.98
185327--186060	165	4.4	164	78	7	432	31	22	19	26	1.98
185353--186060	249	2.8	249	87	0	950	31	22	19	26	1.98
186883--186975	36	2.6	35	79	8	98	25	19	13	40	1.89
186916--187240	36	9.1	36	76	10	321	26	18	12	42	1.86
187010--187218	71	2.9	72	86	3	278	27	18	12	41	1.87
187147--187211	21	3.4	21	64	24	52	26	21	9	43	1.82
187109--187368	138	1.9	136	85	3	360	26	19	13	40	1.88
186907--187405	245	2.0	247	89	2	772	27	18	13	41	1.87
187248--187405	37	4.4	37	79	4	189	25	18	14	41	1.89
187248--187405	73	2.2	72	83	2	201	25	18	14	41	1.89
187738--187789	12	4.2	13	81	15	51	40	0	1	57	1.10
188970--189037	11	6.3	11	77	14	61	22	4	0	73	1.01
189043--189071	2	15.0	2	92	7	51	48	0	0	51	1.00
189406--189499	24	3.7	24	70	21	66	18	7	3	71	1.23
189932--190045	15	7.6	15	72	11	72	19	0	15	64	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
189924--190041	30	4.0	30	82	5	141	20	0	14	64	1.34
195050--195099	19	2.6	19	87	0	82	18	16	16	50	1.79
199390--199744	171	2.0	172	87	6	511	41	3	7	47	1.48
228747--228786	21	1.9	21	94	0	71	30	15	7	47	1.72
228781--228879	33	3.0	33	92	1	155	33	7	14	45	1.71
228865--228919	13	4.2	13	75	13	58	34	3	12	49	1.59
229113--229169	21	2.7	21	80	0	78	22	24	22	29	1.99
229353--229386	18	1.9	18	88	5	52	41	11	8	38	1.73
230181--230242	23	2.7	22	78	11	63	67	6	9	16	1.39
232050--232124	36	2.1	36	100	0	150	42	5	12	40	1.65
232762--232968	53	3.9	53	81	5	238	35	9	18	36	1.84
235652--235684	13	2.5	13	90	9	50	66	0	0	33	0.92
235728--235760	17	2.0	17	94	5	59	30	0	3	66	1.06
235721--235780	26	2.3	26	81	18	79	38	0	1	60	1.07
236631--236659	2	14.5	2	100	0	58	51	0	0	48	1.00
242540--242615	35	2.2	35	95	0	134	27	25	6	40	1.80
246958--247013	26	2.1	27	93	3	96	26	7	17	48	1.73
248291--248356	22	3.0	22	100	0	132	27	27	27	18	1.98
248571--248629	30	2.0	30	93	0	100	33	23	3	38	1.72
248654--248709	29	1.9	29	92	0	94	39	12	8	39	1.75
249009--249160	68	2.2	68	89	2	225	17	28	26	26	1.98
249140--249182	21	2.0	21	86	0	59	16	25	27	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
255220--255285	22	3.0	22	100	0	132	27	27	27	18	1.98
255500--255558	30	2.0	30	93	0	100	33	23	3	38	1.72
255583--255638	29	1.9	29	92	0	94	39	12	8	39	1.75
255937--256087	68	2.3	66	88	4	214	17	28	27	26	1.98
256069--256109	21	2.0	20	85	4	55	17	26	26	29	1.97
258699--258841	21	6.7	21	84	4	146	36	23	15	25	1.94
258676--258751	23	3.4	22	78	10	75	39	25	14	21	1.91
258673--258807	44	3.1	43	81	11	134	38	22	16	22	1.93
260743--260768	2	13.0	2	100	0	52	50	0	0	50	1.00
261184--261256	36	2.0	36	81	5	85	53	2	1	42	1.23
261410--261441	13	2.5	13	100	0	64	40	0	12	46	1.42
267985--268014	2	15.0	2	100	0	60	50	0	0	50	1.00
269434--269465	14	2.3	14	100	0	64	34	9	6	50	1.60
271309--271348	16	2.4	17	87	4	55	37	2	0	60	1.11
274539--274606	22	3.0	22	97	2	127	26	27	26	19	1.99
275239--275278	21	1.9	21	89	0	62	10	32	32	25	1.89
275240--275412	67	2.6	66	86	4	213	17	27	27	27	1.98
293835--293917	3	27.7	3	92	0	139	33	2	1	62	1.16
294397--294432	6	5.8	6	87	6	54	52	16	30	0	1.44
295291--295326	19	1.9	19	94	5	65	22	0	5	72	1.05
295355--295397	22	2.0	21	86	4	59	37	2	2	58	1.24
296076--296129	28	2.0	27	81	3	63	31	1	1	64	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
296084--296119	18	1.9	19	88	5	56	33	2	0	63	1.08
296093--296153	24	2.6	23	78	17	63	27	4	4	62	1.37
303330--303542	114	1.9	114	89	0	336	33	15	20	30	1.94
305687--305766	40	2.0	40	95	0	142	33	16	21	28	1.95
306159--306213	22	2.5	22	82	5	67	32	12	16	38	1.86
306650--307955	117	11.4	114	92	3	1658	36	13	20	29	1.91
308080--308175	3	31.7	3	91	2	156	35	1	1	62	1.09
309531--309566	19	1.9	19	94	5	65	22	0	5	72	1.05
309594--309636	22	2.0	21	86	4	59	37	2	2	58	1.24
310510--310560	25	2.0	26	84	3	68	52	1	3	41	1.31
313152--313206	20	2.7	20	73	21	51	49	14	1	34	1.54
315838--315869	15	2.0	17	88	11	50	56	0	6	37	1.25
328283--328513	84	2.8	82	82	3	286	28	24	21	25	1.99
328538--328591	21	2.6	21	100	0	108	20	29	14	35	1.93
328559--328751	36	5.3	36	86	4	264	24	24	15	35	1.94
328559--329047	72	6.7	72	69	11	303	26	23	15	33	1.95
328852--329047	36	5.4	36	88	1	286	25	23	15	35	1.94
328559--329130	296	1.9	296	98	0	1099	27	24	16	32	1.96
329480--330859	106	13.0	106	94	0	2283	34	24	18	23	1.96
331104--331147	3	14.0	3	81	9	52	34	0	2	63	1.07
331104--331139	16	2.2	16	90	0	54	33	0	2	63	1.08
331116--331159	9	4.8	9	82	2	52	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
333122--333176	20	2.7	20	73	21	51	49	14	1	34	1.54
334246--334345	34	2.9	35	76	8	109	43	15	14	28	1.85
345369--345397	14	2.1	14	93	6	51	27	6	0	65	1.18
349225--349349	51	2.5	51	95	0	223	24	24	26	24	2.00
349364--349490	51	2.5	51	81	2	139	20	29	33	16	1.95
349760--349823	31	2.1	31	93	0	110	32	6	6	54	1.50
350879--350938	29	2.0	30	87	3	86	38	1	8	51	1.42
351587--351616	10	3.0	10	90	0	51	20	6	3	70	1.25
352030--352118	38	2.4	39	84	7	130	40	37	10	12	1.77
352076--352592	205	2.5	205	89	3	746	38	25	11	24	1.89
353097--353142	23	2.0	23	87	8	67	76	0	2	21	0.90
359461--359543	41	2.0	41	85	4	112	46	9	9	33	1.69
359473--359555	41	2.0	41	97	0	157	40	9	12	37	1.75
362093--362162	31	2.3	31	90	5	106	52	10	5	31	1.58
363899--363929	15	2.1	15	93	0	53	9	38	32	19	1.84
367365--367420	19	3.0	19	92	2	87	25	12	25	37	1.91
380148--380172	2	12.5	2	100	0	50	52	0	0	48	1.00
380394--380455	26	2.3	26	81	15	72	45	1	1	51	1.20
383164--383225	31	2.0	32	90	3	99	38	6	8	46	1.59
385278--385610	75	4.4	75	84	1	398	41	11	13	33	1.80
385278--385611	150	2.2	150	86	2	456	41	11	13	34	1.80
385585--385649	23	2.8	23	92	0	103	36	13	15	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
385593--385656	23	2.8	23	90	0	74	37	15	12	34	1.85
385706--385753	23	2.1	23	92	3	80	39	18	10	31	1.85
385608--385851	97	2.5	98	84	6	341	40	13	12	33	1.83
385520--385972	218	2.1	219	88	1	658	39	13	13	33	1.83
385812--385879	23	2.9	23	80	2	73	38	19	5	36	1.76
385706--385995	121	2.4	121	87	0	429	39	14	12	33	1.84
385931--386018	23	3.8	23	90	0	149	32	20	13	32	1.92
388117--388154	20	1.9	20	88	0	58	21	26	10	42	1.85
395203--395266	29	2.2	29	88	0	92	54	1	6	37	1.35
401957--401981	2	12.5	2	100	0	50	48	0	0	52	1.00

Tables:   1   2   3   4   5   6   7