genome.fa.s8981.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008981.1 Hibiscus syriacus cultivar Beakdansim tig00112343_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1473337

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 776 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404129--404267	69	2.0	69	97	0	260	28	25	18	27	1.98
405575--405815	41	6.0	41	80	7	208	46	16	17	20	1.84
405671--405781	34	3.1	34	75	16	123	46	16	18	18	1.84
405590--405815	116	1.9	117	84	0	301	46	15	17	19	1.84
405631--405781	75	2.0	75	93	0	257	46	15	19	19	1.84
418599--418782	56	3.3	56	84	1	217	39	16	15	28	1.89
420313--420339	3	9.0	3	100	0	54	66	0	33	0	0.92
427566--427725	51	3.1	51	85	0	176	19	34	11	34	1.88
433037--433110	31	2.4	31	95	0	130	20	17	8	54	1.68
433435--433471	18	2.1	18	89	0	56	32	5	10	51	1.60
433427--433473	24	2.0	24	86	0	67	34	4	14	46	1.64
433730--433816	39	2.2	39	95	0	156	48	20	13	17	1.81
434153--434201	22	2.2	23	78	10	57	40	12	10	36	1.77
434219--434289	23	3.2	23	84	8	92	33	4	22	39	1.74
434225--434294	21	3.2	21	78	11	70	32	4	22	40	1.74
434340--434999	332	2.0	327	95	1	987	43	7	10	38	1.69
437602--437682	40	2.0	40	90	0	126	40	12	20	25	1.88
437620--437692	40	1.9	37	81	13	87	41	13	20	24	1.89
443461--443516	28	2.0	28	100	0	112	28	21	32	17	1.96
446854--446973	8	15.0	8	98	0	222	37	25	12	25	1.91
456760--456823	31	2.1	31	100	0	128	40	12	25	21	1.88
459365--459398	13	2.6	13	86	13	52	64	5	0	29	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
462788--462983	54	3.4	54	77	15	221	34	2	34	29	1.69
462853--462891	18	2.2	18	85	0	51	30	0	35	33	1.58
462812--462943	66	2.0	66	89	5	205	34	1	35	28	1.67
476663--476755	43	2.1	43	90	5	143	12	17	21	48	1.80
487029--487275	121	2.0	121	100	0	494	35	12	15	36	1.86
491590--491655	26	2.5	26	80	9	80	66	0	7	25	1.18
492597--492643	17	2.7	17	96	3	85	8	23	38	29	1.84
492762--492822	22	3.0	20	77	11	61	73	6	3	16	1.17
492838--493036	101	1.9	105	80	10	232	47	7	4	40	1.52
492939--493241	72	4.2	71	72	18	209	45	6	4	43	1.49
493087--493172	38	2.3	39	86	6	115	45	4	4	45	1.45
492984--493184	73	2.8	68	77	17	183	44	6	5	42	1.54
492984--493257	110	2.5	105	80	12	279	44	6	5	43	1.53
492939--493255	35	8.8	35	75	15	229	45	6	5	43	1.52
494106--495385	105	12.2	105	92	1	2062	22	18	25	33	1.97
494106--495385	420	3.0	420	96	0	2301	22	18	25	33	1.97
498494--498583	46	1.9	47	93	6	157	35	13	23	27	1.92
500100--500145	17	2.7	17	93	6	76	8	21	39	30	1.84
500441--500760	37	8.4	38	75	14	191	45	6	4	43	1.49
500486--500643	75	2.1	74	83	8	194	46	7	5	40	1.56
500603--500627	12	2.1	12	100	0	50	44	8	8	40	1.63
500593--500688	44	2.2	43	87	9	133	45	4	4	45	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
500486--500778	157	1.8	158	79	9	337	44	6	5	43	1.54
501811--501864	26	2.1	26	100	0	108	57	12	7	22	1.60
505645--505699	26	2.2	25	80	9	58	54	3	1	40	1.28
508453--509945	526	2.8	529	94	1	2616	30	18	24	27	1.98
510644--510688	21	2.1	21	87	0	63	31	28	24	15	1.96
512493--512560	23	3.0	23	91	0	100	20	27	26	25	1.99
517074--517113	2	19.5	2	94	5	71	47	0	2	50	1.14
517633--517700	23	3.0	23	91	0	100	20	27	26	25	1.99
520318--520381	2	32.0	2	96	0	119	48	0	1	50	1.10
525287--525361	31	2.4	31	90	0	123	29	13	12	45	1.79
525712--525808	45	2.2	45	81	7	110	46	5	10	38	1.60
534141--534191	26	1.9	27	84	4	68	41	3	3	50	1.39
534219--534270	23	2.2	24	79	3	61	36	7	1	53	1.41
542301--542370	23	3.3	23	61	19	60	25	18	8	47	1.77
542294--542377	41	2.1	40	97	2	159	22	19	13	45	1.84
544340--544681	170	2.0	171	98	0	668	32	25	28	13	1.93
553711--553752	21	2.0	21	100	0	84	28	19	14	38	1.90
554837--554877	17	2.4	19	80	19	54	58	0	36	4	1.20
561385--561481	34	2.9	34	98	0	185	28	26	19	24	1.99
568854--568929	32	2.4	32	81	0	98	28	28	25	17	1.97
573768--573816	25	2.0	25	95	0	89	44	4	14	36	1.64
574623--574649	12	2.2	12	100	0	54	33	0	33	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
576184--576211	12	2.3	12	100	0	56	42	10	0	46	1.38
576242--576329	30	3.0	30	89	1	124	35	3	0	61	1.13
576386--576423	12	2.8	13	78	21	51	50	0	0	50	1.00
576461--576533	30	2.4	31	83	4	103	67	2	5	24	1.26
578694--578725	2	16.0	2	100	0	64	50	0	0	50	1.00
580105--580140	18	1.9	19	88	5	56	38	2	0	58	1.13
581736--581796	30	2.1	29	90	6	97	40	1	27	29	1.66
595480--595509	6	5.0	6	100	0	60	16	50	33	0	1.46
603105--603166	26	2.4	27	94	5	110	46	12	8	32	1.71
604503--604617	35	3.3	35	91	3	178	45	19	5	30	1.72
604551--604616	20	3.5	21	69	28	67	43	19	4	31	1.71
609139--609199	21	3.2	21	65	29	64	42	21	4	31	1.74
609130--609205	35	2.2	35	100	0	152	46	19	6	27	1.75
609643--609783	32	4.4	32	87	0	183	31	9	19	39	1.84
609768--609850	30	2.8	30	87	7	125	33	9	21	34	1.86
622639--622670	16	2.0	16	93	0	55	34	6	25	34	1.81
634527--634551	2	12.5	2	100	0	50	52	0	0	48	1.00
634610--634652	18	2.4	18	84	0	59	25	30	18	25	1.98
644841--644865	2	12.5	2	100	0	50	52	0	0	48	1.00
648278--648339	21	3.0	21	90	0	88	24	20	24	30	1.99
650251--650464	114	1.9	115	86	4	308	53	3	13	29	1.57
654210--654248	18	2.2	18	86	9	53	53	2	0	43	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
655326--655376	24	2.2	23	86	6	68	9	15	15	58	1.62
656353--656403	19	2.5	20	93	6	86	35	37	11	15	1.84
664943--665012	36	1.9	36	82	5	88	58	2	1	37	1.22
665531--665595	31	2.1	31	88	2	96	52	12	3	32	1.54
671566--671645	36	2.2	38	88	4	119	12	11	36	40	1.79
671806--671863	28	2.1	28	87	6	84	17	8	29	44	1.78
672462--672522	16	3.7	16	91	4	77	29	22	8	39	1.83
674111--674211	51	2.0	51	90	7	161	30	16	17	34	1.93
675192--675238	18	2.6	18	83	6	60	42	0	0	57	0.98
680559--680637	28	2.7	30	84	9	110	49	0	1	49	1.09
680590--680649	30	2.0	31	86	3	86	53	0	0	46	1.00
688267--688293	2	13.5	2	100	0	54	48	0	0	51	1.00
689734--689772	17	2.3	17	83	12	53	58	0	38	2	1.12
691970--692002	16	2.2	15	89	10	50	48	30	0	21	1.50
692597--692663	32	2.1	32	91	0	107	22	22	14	40	1.90
698806--698843	18	2.1	19	85	5	51	15	2	10	71	1.25
703559--703588	13	2.2	14	94	5	53	50	3	0	46	1.18
704594--704631	18	2.1	18	95	0	67	31	10	18	39	1.85
704600--704644	18	2.4	18	85	3	54	31	13	22	33	1.92
707749--707956	75	2.8	75	85	2	247	23	30	23	22	1.99
713708--713789	21	3.9	21	76	10	78	24	35	24	15	1.94
716385--716592	75	2.8	75	82	2	229	24	30	23	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
717701--718251	257	2.2	249	87	7	807	27	11	19	41	1.86
721368--721472	55	1.9	55	98	0	201	22	11	23	41	1.86
724626--724976	176	2.0	176	89	0	531	37	18	15	28	1.92
735917--735960	19	2.2	20	88	4	63	13	22	40	22	1.89
737317--737490	87	2.0	87	98	0	339	22	23	24	28	1.99
760884--760943	29	2.0	32	84	15	83	30	5	6	58	1.45
761850--761962	60	1.9	60	83	0	145	39	12	11	36	1.79
767760--767880	60	2.0	59	88	1	179	22	18	20	38	1.93
768904--768969	29	2.3	29	89	0	96	48	22	19	9	1.77
769786--769842	27	2.1	27	90	0	87	7	40	12	40	1.70

Tables:   1   2   3   4   5   6   7