genome.fa.s8981.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008981.1 Hibiscus syriacus cultivar Beakdansim tig00112343_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1473337

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 776 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1399922--1399957	18	1.9	18	88	5	54	11	0	11	77	0.99
1404466--1404537	29	2.5	28	80	8	72	45	1	19	33	1.59
1408404--1408432	8	3.8	8	90	9	51	0	0	6	93	0.36
1408402--1408432	15	2.1	15	100	0	62	0	0	6	93	0.35
1409554--1409596	15	2.9	15	96	0	77	53	0	0	46	1.00
1409599--1409755	32	5.5	32	68	27	138	36	0	10	52	1.41
1409584--1409772	54	3.5	54	95	0	324	37	0	10	51	1.40
1409703--1409852	80	1.9	80	90	0	237	36	1	11	51	1.46
1409782--1409890	32	3.7	32	71	22	112	40	0	10	48	1.43
1409658--1409906	134	1.9	134	92	0	417	36	0	10	51	1.43
1409788--1409921	54	2.5	54	93	0	223	39	0	8	50	1.39
1409869--1409911	22	2.0	22	95	0	77	37	0	11	51	1.39
1409936--1409994	31	1.9	31	92	0	100	44	8	6	40	1.61
1412809--1412999	95	2.0	95	98	0	373	32	9	17	39	1.82
1412986--1413031	2	23.0	2	100	0	92	50	0	0	50	1.00
1414045--1414097	22	2.5	20	78	6	52	50	1	0	47	1.12
1418345--1418370	2	13.0	2	100	0	52	50	0	0	50	1.00
1422652--1422700	6	8.7	6	82	8	59	69	0	2	28	1.00
1422657--1422699	21	2.0	22	86	4	61	67	0	2	30	1.03
1425830--1425882	6	8.8	6	100	0	106	16	0	33	49	1.47
1427874--1428134	135	1.9	135	81	3	310	28	22	15	33	1.95
1429491--1429672	68	2.7	64	89	7	265	14	28	9	48	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1432045--1432084	21	2.0	21	85	9	57	25	2	0	72	0.97
1432588--1432618	14	2.3	13	94	5	53	29	0	3	67	1.06
1435395--1435428	3	11.3	3	100	0	68	67	0	0	32	0.91
1440416--1440833	213	2.0	213	91	2	680	25	22	14	37	1.92
1448814--1448862	19	2.6	19	96	0	89	30	24	22	22	1.99
1448936--1449075	42	3.4	42	82	5	160	25	17	22	34	1.96
1448978--1449047	21	3.3	21	67	15	63	21	17	25	35	1.95
1449012--1449076	21	3.2	19	74	16	67	27	21	18	32	1.97
1449920--1450249	42	7.9	42	93	0	565	36	24	19	19	1.94
1449920--1450289	42	8.8	41	92	1	510	36	24	19	19	1.95
1450306--1450353	21	2.3	21	89	7	71	18	16	31	33	1.94
1450712--1450924	109	2.0	109	90	1	338	45	4	13	36	1.65
1454452--1454830	55	7.0	54	81	9	382	27	27	15	29	1.96
1454472--1454784	55	5.8	55	88	3	481	28	28	14	29	1.95
1454472--1454784	108	2.9	108	94	0	536	28	28	14	29	1.95
1454465--1454830	163	2.2	163	86	4	506	27	27	15	29	1.96
1454472--1454819	108	3.2	108	91	1	500	27	27	15	29	1.96
1454789--1455398	51	11.7	52	80	8	618	22	25	19	32	1.97
1454784--1455407	156	4.0	154	81	8	726	23	24	19	32	1.97
1454784--1455399	104	5.9	103	85	4	697	22	25	19	32	1.97
1455780--1456009	36	6.4	36	87	2	284	20	19	23	36	1.95
1455780--1456018	108	2.2	109	85	4	315	20	19	23	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1457209--1457445	125	1.9	125	88	1	359	23	24	18	33	1.97
1467983--1468040	19	3.1	19	97	0	107	32	27	15	24	1.95
1468055--1468109	20	2.7	20	82	2	65	21	23	16	38	1.93
1468125--1468189	20	3.2	20	93	0	112	26	29	18	26	1.98
1468674--1468768	42	2.3	40	89	10	156	32	35	12	18	1.89
1469277--1469345	20	3.5	20	87	0	102	36	26	20	17	1.94
1470650--1470676	14	1.9	14	100	0	54	7	18	29	44	1.77
1470651--1470683	14	2.5	13	90	9	50	6	21	24	48	1.72
1470873--1470932	24	2.5	24	83	0	84	38	18	18	25	1.93
1471744--1471830	20	4.3	20	85	0	111	29	20	25	24	1.99
1471845--1471890	19	2.4	19	85	3	56	21	17	30	30	1.96
1471856--1471892	19	1.9	19	94	0	65	21	16	29	32	1.95

Tables:   1   2   3   4   5   6   7

The End!