genome.fa.s9043.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009043.1 Hibiscus syriacus cultivar Beakdansim tig00112453_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  500226

Tables:   1   2   3   4   

This is table  3  of  4  ( 377 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324507--324604	19	5.7	19	67	22	81	15	20	20	43	1.87
324504--324603	33	3.0	33	88	7	150	18	20	20	42	1.90
326858--326894	12	3.1	12	88	0	56	0	21	0	78	0.75
327880--327931	21	2.5	21	87	3	70	38	17	23	21	1.93
327920--327977	20	2.9	20	89	0	71	29	24	20	25	1.99
327916--327986	20	3.5	20	82	0	70	35	22	19	22	1.96
328196--328235	20	2.0	20	90	0	62	47	17	22	12	1.81
328259--328312	14	3.5	14	77	22	63	11	20	20	48	1.80
328241--328311	33	2.2	33	84	0	88	19	19	21	39	1.93
328439--328475	14	2.6	14	86	0	56	48	21	0	29	1.50
329918--329977	21	2.9	20	73	11	59	20	13	45	21	1.85
330342--330388	20	2.3	20	89	7	69	36	25	21	17	1.94
330457--330514	14	3.9	14	79	16	71	10	17	24	48	1.78
330444--330530	32	2.7	33	94	3	158	12	18	21	47	1.82
330515--330569	20	2.8	19	83	8	65	16	23	23	36	1.94
331051--331095	18	2.5	18	85	0	63	15	15	42	26	1.87
332415--332473	20	3.0	20	87	0	73	42	22	18	16	1.89
332736--332779	22	2.0	22	91	8	72	20	13	45	20	1.85
332968--333019	20	2.6	20	90	6	79	25	19	30	25	1.98
333028--333081	20	2.7	20	97	0	99	25	18	24	31	1.97
332947--333084	61	2.3	61	83	5	188	23	16	24	34	1.95
333649--333811	87	1.9	87	94	0	290	41	9	14	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
337324--337570	120	2.1	120	92	0	413	38	15	13	32	1.86
337159--337752	302	2.0	303	95	0	1064	34	15	14	34	1.88
337444--338396	183	5.2	183	96	1	1707	33	16	14	35	1.89
337444--338396	365	2.6	366	96	0	1732	33	16	14	35	1.89
339606--339663	12	4.8	12	80	0	62	18	31	8	41	1.81
340959--341722	200	3.8	200	95	0	1341	30	18	14	35	1.92
341944--342004	19	3.3	18	88	2	59	52	11	1	34	1.47
341956--342004	19	2.6	19	96	0	89	55	10	2	32	1.45
343860--343924	21	3.1	21	93	0	103	16	30	10	41	1.83
346321--346381	20	3.1	19	80	13	70	19	14	11	54	1.71
346107--346576	181	2.6	181	90	1	710	27	16	14	41	1.87
347430--347490	21	3.2	21	65	29	64	31	4	21	42	1.74
347428--347541	35	3.2	36	90	6	178	32	4	20	42	1.71
352049--352109	21	3.2	21	65	29	64	31	4	21	42	1.74
352047--352160	35	3.2	36	90	6	178	32	4	20	42	1.71
353840--353890	2	25.5	2	100	0	102	50	0	0	49	1.00
357256--357335	4	19.2	4	72	25	60	75	3	0	21	0.96
357302--357413	36	3.1	34	74	13	100	66	2	5	25	1.25
358596--359219	109	5.9	108	83	7	627	22	19	25	32	1.97
358590--359218	218	3.0	210	82	8	706	22	20	25	32	1.98
359745--359914	65	2.6	65	93	0	297	37	12	18	31	1.88
359814--360029	102	2.1	102	94	0	387	36	12	20	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
359935--360116	87	2.1	87	93	0	310	35	11	21	31	1.89
360002--360050	22	2.3	22	89	3	73	40	10	24	24	1.86
359833--360218	189	2.0	189	94	0	673	36	12	20	31	1.90
360022--360256	102	2.3	102	90	0	371	36	12	21	29	1.91
360170--360274	36	2.9	36	94	1	174	37	14	23	24	1.92
361135--361185	22	2.3	22	96	0	93	25	11	27	35	1.91
361797--361855	20	2.9	21	80	14	70	1	15	6	76	1.07
361813--361851	19	2.1	19	85	4	53	0	17	7	74	1.05
361804--361858	17	3.2	17	71	16	51	0	16	7	76	1.00
364844--364903	5	12.4	5	77	10	54	75	5	0	20	0.99
364839--364919	4	19.2	4	72	25	53	75	3	0	20	0.96
364878--364987	23	4.8	22	71	17	66	69	0	5	24	1.16
367826--367962	68	2.0	68	95	0	247	44	11	18	24	1.84
368933--368985	9	5.7	9	78	8	52	13	30	32	24	1.93
368932--368986	19	2.9	19	81	8	76	14	30	30	23	1.94
372161--372191	13	2.4	13	94	0	53	16	19	48	16	1.81
372204--372247	10	4.6	10	86	8	65	34	29	22	13	1.93
372204--372248	19	2.4	19	96	0	81	33	28	22	15	1.95
379375--379434	13	4.8	13	86	12	90	15	20	48	16	1.81
379381--379426	23	2.0	23	100	0	92	8	21	52	17	1.71
379447--379501	9	5.6	10	83	10	69	34	27	21	16	1.95
379454--379502	10	4.8	11	80	16	61	36	24	20	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379454--379502	19	2.5	20	86	6	64	36	24	20	18	1.94
380227--380403	77	2.3	77	99	0	345	45	15	7	31	1.74
382148--382213	16	4.1	16	75	9	55	66	3	24	6	1.28
383529--383579	22	2.3	22	90	6	77	25	37	31	5	1.80
383958--384015	19	3.2	19	80	9	50	51	0	1	46	1.11
391405--391494	35	2.5	36	89	5	130	70	0	5	24	1.09
391436--391492	14	4.0	14	72	9	53	73	0	5	21	1.02
391536--391578	18	2.4	18	92	7	70	74	0	4	20	1.00
392993--393032	18	2.5	15	88	12	53	17	7	0	75	1.03
393455--393654	76	2.7	71	80	10	197	55	11	1	31	1.45
395366--395410	5	8.8	5	80	4	54	77	4	4	13	1.07
400859--400948	35	2.5	36	85	8	114	72	0	4	23	1.03
400846--400948	15	7.1	15	69	15	58	71	0	3	24	1.02
400991--401033	18	2.4	18	88	7	61	72	0	2	25	0.97
401650--401691	14	2.9	15	75	10	52	61	4	0	33	1.17
401624--401813	76	2.6	75	86	9	250	55	13	0	30	1.42
401706--401813	24	4.3	24	65	21	69	56	14	0	27	1.45
401625--401849	76	3.0	75	78	12	241	56	12	1	30	1.44
402504--402574	25	3.0	23	75	24	76	42	4	1	52	1.29
402515--402574	22	2.6	22	82	17	77	41	5	1	51	1.33
402524--402585	25	2.4	24	81	10	70	43	3	1	51	1.27
402719--402797	31	2.5	32	81	6	99	48	12	7	31	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403108--403152	21	2.1	21	84	8	56	37	2	4	55	1.32
408369--408456	39	2.3	39	89	0	131	35	18	17	29	1.93
408877--408920	21	2.3	18	85	14	54	61	15	11	11	1.57
414516--414995	182	2.6	182	89	3	709	41	15	16	26	1.88
414912--414957	20	2.3	19	82	10	65	52	10	17	19	1.74
417190--417233	21	2.1	21	91	0	70	40	11	31	15	1.83
417266--417331	33	2.0	33	87	0	96	33	0	43	22	1.54
419123--419168	19	2.4	19	96	0	83	32	0	8	58	1.28
419431--419971	201	2.7	201	95	0	958	36	14	15	32	1.88
421450--421505	12	4.7	12	86	0	58	35	17	35	10	1.85
421442--421478	18	2.1	18	89	0	56	43	10	32	13	1.79
422964--423073	51	2.1	53	79	12	122	37	18	19	25	1.94
425968--426452	199	2.4	199	84	6	583	40	15	15	28	1.87
426679--426845	87	1.9	86	92	1	280	34	13	10	41	1.80
426763--426807	23	2.0	23	90	0	72	37	17	8	35	1.81
426760--426817	23	2.4	24	77	8	64	34	13	8	43	1.75
428302--428411	30	3.7	30	81	0	94	30	24	13	31	1.94
428359--428418	30	2.0	30	93	0	102	31	16	10	41	1.81
428530--428573	22	2.0	23	90	4	72	45	13	6	34	1.70
435884--435939	24	2.3	24	90	0	85	39	19	17	23	1.92
441480--441556	27	2.9	27	88	7	79	40	1	10	48	1.46
441494--441556	27	2.3	28	94	0	85	36	1	11	50	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441546--441597	19	2.7	19	82	11	61	42	0	7	50	1.31
441537--441592	20	2.7	21	78	10	62	46	0	8	44	1.34
441620--441658	13	2.8	13	85	11	51	30	2	15	51	1.57
448488--448516	3	9.7	3	100	0	58	0	34	0	65	0.93
449688--450018	45	7.4	45	90	0	527	33	10	26	29	1.89
454505--454558	12	4.2	13	76	19	60	3	33	0	62	1.12
454505--454558	24	2.1	26	86	10	76	3	33	0	62	1.12
456076--456120	20	2.2	20	92	0	72	35	17	20	26	1.95
461167--461678	45	11.4	45	88	1	704	34	8	24	31	1.86
461211--461416	23	9.1	21	64	16	74	34	10	24	31	1.89

Tables:   1   2   3   4