genome.fa.s9043.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009043.1 Hibiscus syriacus cultivar Beakdansim tig00112453_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  500226

Tables:   1   2   3   4   

This is table  1  of  4  ( 377 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2484--2522	20	2.0	20	89	0	60	38	15	25	20	1.92
3081--3224	45	3.2	44	76	7	141	41	6	20	31	1.78
3158--3214	29	2.0	29	86	13	82	40	5	21	33	1.75
3311--3370	22	2.7	22	76	10	68	20	15	25	40	1.90
5883--5934	21	2.5	21	90	0	77	30	28	15	25	1.96
18405--18434	12	2.5	12	94	0	51	30	10	10	50	1.69
24421--24450	12	2.5	12	94	0	51	30	10	10	50	1.69
32944--32987	21	2.1	21	83	8	54	50	11	22	15	1.76
35083--35136	19	2.6	21	85	8	67	37	16	16	29	1.91
35519--35912	55	7.2	55	88	2	569	32	11	19	36	1.88
40647--40674	13	2.2	13	100	0	56	28	7	17	46	1.75
47953--48108	22	6.6	22	65	25	54	54	2	7	35	1.43
47973--48190	49	4.5	48	75	12	164	54	2	8	35	1.43
48005--48732	22	34.5	22	68	19	158	48	2	7	41	1.46
48120--48197	29	2.7	29	82	9	95	53	2	8	34	1.46
48342--48615	11	25.5	11	67	17	96	47	1	5	46	1.33
48405--48538	7	18.1	7	67	24	55	44	1	3	50	1.29
48405--48534	17	7.9	16	69	19	65	43	1	3	50	1.29
48391--48523	41	3.3	41	75	16	159	44	3	4	48	1.38
48347--48533	82	2.3	82	98	0	358	44	2	4	48	1.34
48384--48500	21	5.7	20	70	18	80	42	3	4	49	1.39
48488--49469	2	494.0	2	62	24	92	42	6	3	48	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48505--48731	69	3.3	69	79	11	198	50	0	7	40	1.38
48523--48637	33	3.4	33	82	8	115	53	0	6	40	1.28
48789--48849	13	4.5	13	74	11	59	37	4	0	57	1.20
48966--49016	19	2.7	19	76	8	59	43	9	1	45	1.48
48918--49421	8	65.8	8	67	25	119	39	8	1	50	1.41
49151--49296	66	2.3	66	84	10	187	39	6	1	52	1.37
49096--49449	158	2.3	153	80	13	404	39	8	1	50	1.41
49026--49423	100	4.0	99	73	17	272	39	8	1	51	1.40
49291--49423	25	5.2	26	70	22	93	41	10	0	48	1.38
49291--49431	52	2.7	51	81	12	171	40	11	0	48	1.39
49499--49569	7	9.4	7	75	23	56	50	0	14	35	1.43
49498--49567	24	3.0	24	78	14	76	51	0	12	35	1.40
49571--49598	2	14.0	2	100	0	56	50	0	0	50	1.00
49605--49667	20	3.0	20	80	15	65	34	14	0	50	1.43
49600--49681	35	2.3	37	79	14	91	37	14	0	47	1.45
49600--49667	7	9.4	7	77	16	68	35	14	0	50	1.44
49694--50224	2	264.0	2	67	20	200	41	5	2	50	1.40
49972--50126	27	5.7	27	72	19	81	36	9	3	50	1.52
49967--50126	81	2.0	77	85	8	214	37	8	4	49	1.54
50008--50126	27	4.5	27	71	22	90	36	10	3	49	1.55
50053--50141	29	3.2	29	71	16	80	34	8	3	52	1.49
50269--50322	20	2.7	20	80	13	65	40	12	1	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50618--50670	2	26.5	2	88	0	79	49	5	0	45	1.26
51112--51150	8	4.8	8	90	3	60	28	2	23	46	1.65
56054--56090	19	1.9	19	94	0	65	32	29	16	21	1.95
56116--56208	20	4.6	20	78	5	80	26	20	20	32	1.97
56195--56270	21	3.7	21	77	10	84	38	23	17	21	1.93
56174--56271	41	2.4	41	82	3	126	38	21	17	22	1.93
61813--61915	20	5.2	20	77	2	109	20	18	22	38	1.93
61812--61915	39	2.6	39	80	3	109	21	18	22	38	1.93
63826--63874	20	2.5	20	96	0	89	36	26	22	14	1.92
63941--63982	19	2.2	19	86	0	57	14	16	28	40	1.88
64003--64046	20	2.2	21	84	12	65	13	15	22	47	1.81
64522--64642	42	2.9	42	77	0	107	24	34	16	23	1.95
64991--65242	131	1.9	133	98	1	490	38	8	13	40	1.75
66060--66103	14	3.1	14	80	3	52	38	4	15	40	1.68
66225--66278	20	2.7	20	85	5	74	42	27	18	11	1.84
66289--66423	34	3.8	34	75	11	126	26	20	17	34	1.95
66323--66584	20	13.8	20	79	10	271	27	19	20	32	1.97
66343--66556	54	3.9	54	78	7	232	27	19	20	33	1.96
66281--66452	74	2.3	74	91	0	281	27	19	18	34	1.95
66323--66584	113	2.3	113	88	2	373	27	19	20	32	1.97
66436--66576	74	1.9	73	92	1	237	24	17	24	33	1.96
66555--66824	140	1.9	140	97	0	513	41	15	13	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69852--69892	22	1.9	21	85	5	55	26	12	39	21	1.89
70022--70150	20	6.3	20	75	10	127	24	18	27	30	1.98
70037--70150	41	2.8	41	93	0	192	23	18	26	31	1.97
70057--70131	21	3.6	21	77	10	91	21	16	25	37	1.93
70865--70912	17	2.6	20	75	21	59	54	6	8	31	1.55
70942--70987	17	2.5	20	73	23	55	56	6	6	30	1.50
70949--70984	17	2.2	17	90	5	56	50	8	8	33	1.63
70865--70987	36	3.3	36	66	16	97	53	8	9	27	1.63
70833--70987	77	2.0	78	91	3	251	50	12	11	25	1.73
75620--75668	23	2.0	24	84	7	64	55	0	0	44	0.99
80755--80795	11	3.6	11	87	6	55	65	4	4	24	1.32
80876--80920	12	3.7	12	81	3	54	66	0	4	28	1.11
81495--81599	37	2.8	37	85	0	138	30	14	14	40	1.85
82502--83875	106	13.0	106	90	1	2050	22	18	24	34	1.96
84700--84754	22	2.5	22	96	0	101	25	12	25	36	1.91
85379--85424	15	2.9	15	83	6	56	0	8	8	82	0.84
85385--85437	26	2.0	26	82	7	63	3	11	7	77	1.10
88807--88843	19	1.9	19	89	10	58	67	0	24	8	1.17
89517--89569	16	3.2	16	72	5	52	41	26	1	30	1.66
89742--89810	23	3.0	23	83	8	95	27	26	26	20	1.99
89826--90037	103	2.1	102	95	0	379	36	23	13	26	1.92
94526--94578	16	3.2	16	78	5	61	41	24	1	32	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94526--94589	34	1.9	32	84	12	85	42	25	1	31	1.64
94751--94842	23	4.0	23	89	0	121	25	23	29	21	1.99
94858--95070	103	2.1	103	96	0	390	36	23	13	25	1.92
101565--101594	15	2.0	15	100	0	60	33	33	20	13	1.91
101709--101761	23	2.2	26	90	10	85	30	24	5	39	1.78
102073--102298	64	3.5	62	80	5	222	27	19	19	33	1.96
108480--108509	15	2.0	15	100	0	60	33	33	20	13	1.91
108656--108691	12	3.0	12	87	0	54	36	22	5	36	1.78
109063--109205	64	2.2	64	83	2	189	29	20	17	32	1.95
115455--115523	24	2.8	26	83	12	85	31	24	5	37	1.79
115488--115523	12	3.0	12	91	0	63	36	25	5	33	1.79
115830--115975	64	2.3	64	81	5	170	26	19	20	32	1.97
115870--115989	64	1.9	64	82	3	152	27	19	17	35	1.94
117511--117576	23	2.9	23	81	0	69	18	24	22	34	1.96
117601--117676	24	3.2	24	92	0	125	18	25	22	34	1.96
119784--119827	23	2.0	21	83	12	54	43	2	9	45	1.48
119853--119911	27	2.1	28	90	3	93	47	8	6	37	1.61
120229--120262	14	2.3	15	90	5	52	58	0	26	14	1.36
124568--124607	20	2.0	21	95	5	73	40	5	0	55	1.22
130809--132457	106	15.7	106	90	2	2520	34	25	17	22	1.96
133184--133288	37	2.8	37	86	0	147	40	14	14	30	1.85
134113--134158	20	2.3	20	81	7	58	28	6	0	65	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134429--134496	32	2.1	33	83	8	86	33	1	1	63	1.13
134486--134572	12	7.5	11	75	12	68	19	4	1	74	1.05
134486--134571	24	3.5	24	79	10	86	19	4	1	74	1.06
134430--134576	8	18.9	8	66	27	52	25	3	1	69	1.12
134430--134559	24	5.4	23	72	17	86	25	3	1	70	1.11
134487--134588	35	2.9	33	81	12	91	18	3	1	75	1.05
136739--137062	161	2.0	161	100	0	648	29	14	16	40	1.88
148285--148345	23	2.6	22	73	14	52	29	24	24	21	1.99
148801--148903	2	52.0	2	92	1	172	49	2	0	47	1.16
151424--151541	60	2.0	60	87	0	173	23	23	24	27	2.00

Tables:   1   2   3   4