Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009043.1 Hibiscus syriacus cultivar Beakdansim tig00112453_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  500226

Tables:   1   2   3   4   

This is table  4  of  4  ( 377 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
461256--461548
23
13.0
24
63
15
88
34
10
24
30
1.89
461598--461668
22
3.2
22
67
11
63
33
7
23
35
1.82
468362--468940
200
2.9
198
82
6
697
32
15
14
37
1.87
471420--471468
19
2.6
19
83
0
71
55
8
2
34
1.41
473932--474075
58
2.5
58
96
0
261
36
15
4
43
1.68
474670--474720
19
2.6
20
84
6
77
19
21
19
39
1.93
474690--475048
182
2.0
180
89
1
556
28
15
14
41
1.87
480966--481016
18
2.9
17
76
5
57
54
1
1
41
1.22
482889--482956
31
2.2
31
89
0
100
51
16
11
20
1.75
484510--484542
16
2.1
16
94
5
59
42
0
6
51
1.26
489803--489850
21
2.3
21
88
0
69
25
41
12
20
1.87
489854--489947
21
4.5
21
85
5
118
19
30
27
22
1.98
490468--490574
34
3.1
34
86
0
151
55
3
3
37
1.36
490970--491576
128
4.7
128
96
0
1097
33
20
24
21
1.97
491657--491697
8
5.2
8
82
5
57
36
29
0
34
1.58
495887--495940
26
2.1
26
100
0
108
3
18
25
51
1.62
497902--497994
46
2.0
46
95
0
168
30
29
8
32
1.87

Tables:   1   2   3   4

The End!