genome.fa.s9064.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009064.1 Hibiscus syriacus cultivar Beakdansim tig00112487_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  748991

Tables:   1   2   3   4   

This is table  2  of  4  ( 376 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
227988--229221	400	3.1	398	86	2	1609	38	13	14	33	1.85
233753--233791	21	1.9	20	94	5	69	28	12	10	48	1.74
233661--234189	202	2.6	201	83	5	651	39	14	13	32	1.85
234201--234265	20	3.2	20	80	8	69	44	12	15	27	1.82
237421--238337	220	4.1	221	85	4	1198	31	15	15	37	1.89
237421--238337	448	2.0	446	88	2	1356	31	15	15	37	1.89
239092--239228	65	2.1	65	93	0	229	40	20	7	32	1.80
239543--239875	44	7.6	44	81	3	375	31	14	23	31	1.94
239543--239865	131	2.5	132	82	4	366	31	14	22	30	1.94
240466--240523	17	3.2	18	77	18	50	1	20	3	74	1.06
243209--243248	13	3.2	13	85	7	55	50	0	7	42	1.30
252313--252342	15	2.0	15	93	0	51	33	30	0	36	1.58
258832--258905	22	3.4	22	92	3	132	16	22	43	17	1.88
260461--260515	29	1.9	28	85	10	76	34	10	3	50	1.55
260461--260515	28	1.9	29	88	3	85	34	10	3	50	1.55
261364--261453	31	3.0	30	77	7	94	36	17	12	33	1.87
268596--268626	3	10.0	3	93	6	53	35	0	0	64	0.94
269455--269516	31	2.0	31	81	6	72	54	11	11	22	1.67
272460--272979	83	6.3	83	85	2	588	34	17	19	29	1.94
272460--272979	166	3.2	165	84	3	647	34	17	19	29	1.94
273112--273150	16	2.4	16	86	4	51	17	12	7	61	1.54
273956--274021	31	2.1	31	88	0	96	57	19	4	18	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
274813--274882	6	11.7	6	76	0	50	15	42	5	35	1.71
274813--274882	24	2.9	24	80	0	86	15	42	5	35	1.71
274845--274885	21	2.0	21	85	0	55	19	36	7	36	1.80
289671--289726	19	2.8	20	83	8	69	71	3	0	25	1.02
289672--289726	14	4.1	13	74	23	51	72	3	0	23	1.00
289671--289731	17	3.4	18	78	15	65	68	3	0	27	1.05
289681--289727	11	4.3	11	79	15	53	72	2	0	25	0.96
290534--290561	14	2.0	14	100	0	56	35	21	21	21	1.96
291052--291089	20	1.9	20	100	0	76	63	7	2	26	1.35
302387--302651	45	5.9	45	88	0	334	25	19	19	35	1.95
302387--302638	135	1.9	135	90	0	405	26	19	19	34	1.96
302587--302715	64	2.0	64	83	3	161	23	16	20	40	1.91
302677--302825	50	3.0	50	84	2	192	22	20	17	40	1.92
305497--305635	75	1.9	75	89	0	215	33	12	8	45	1.73
305648--305719	23	3.1	23	83	0	81	33	9	18	38	1.83
307994--308045	27	1.9	27	88	7	79	63	5	0	30	1.18
311397--311457	23	2.7	23	100	0	122	36	8	13	42	1.74
312547--312635	46	1.9	46	84	13	121	31	26	22	19	1.97
312547--312635	23	3.9	23	84	8	103	31	26	22	19	1.97
314669--314851	86	2.1	87	96	3	352	31	19	14	34	1.92
315629--315658	15	2.0	15	100	0	60	46	13	13	26	1.80
322779--322820	21	2.0	21	95	0	75	30	14	7	47	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322815--322913	33	3.0	33	92	1	155	33	7	14	45	1.71
322899--322953	13	4.2	13	75	13	58	34	3	12	49	1.59
323627--323683	15	3.7	15	79	9	69	38	12	7	42	1.70
323646--323679	18	1.9	18	94	5	61	44	11	5	38	1.65
334247--334298	6	8.5	6	93	4	86	82	0	13	3	0.80
341466--341513	20	2.5	19	86	6	62	29	12	31	27	1.93
342037--342401	161	2.2	165	93	2	621	35	11	17	35	1.86
342037--342401	55	6.7	55	92	2	612	35	11	17	35	1.86
344109--344183	29	2.6	28	85	2	87	36	5	4	54	1.42
344109--344311	28	7.3	29	76	9	104	36	5	5	52	1.47
344148--344220	24	2.8	25	84	14	87	28	4	10	56	1.52
344245--344319	28	2.7	28	83	4	89	41	6	2	49	1.43
355007--355102	48	2.0	49	93	6	169	23	30	16	29	1.96
362650--362692	15	3.1	14	90	6	61	76	0	16	6	0.99
365420--365453	15	2.3	15	85	5	52	20	5	0	73	1.04
366169--366210	20	2.1	20	82	8	50	61	16	9	11	1.55
368547--368587	2	20.5	2	100	0	82	51	0	0	48	1.00
381199--381250	20	2.6	20	84	6	61	32	17	26	23	1.96
384112--384167	29	1.9	29	85	0	76	33	14	7	44	1.72
386377--386538	83	2.0	83	96	0	297	27	14	20	37	1.92
387646--387670	3	8.3	3	100	0	50	68	0	0	32	0.90
388621--388707	20	4.3	21	76	5	90	41	3	0	55	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388705--388753	23	2.1	23	81	7	55	40	6	6	46	1.53
394635--394843	75	2.8	76	83	4	262	21	23	31	23	1.98
400112--400317	75	2.7	76	84	3	256	21	23	31	23	1.98
401589--401637	25	2.0	25	91	0	80	30	14	24	30	1.94
406345--406405	25	2.4	25	97	0	113	40	3	0	55	1.16
406425--406572	32	4.5	32	89	5	188	50	0	1	47	1.14
406448--406597	20	7.5	20	84	1	167	51	1	1	46	1.18
406448--406573	2	63.0	2	93	3	200	50	0	0	47	1.12
414182--414271	31	2.9	32	74	8	89	30	3	10	56	1.48
425565--425606	8	5.2	8	83	8	50	35	2	16	45	1.61
425864--425957	38	2.5	38	85	0	134	45	4	19	30	1.69
425864--425959	19	5.1	19	83	0	111	44	4	18	32	1.69
425864--425975	38	2.9	38	82	2	100	46	5	16	31	1.70
429684--429987	47	6.5	47	91	0	446	22	22	11	43	1.85
429900--429973	20	3.3	20	68	22	58	20	25	12	41	1.87
430434--430572	72	1.9	73	83	4	183	30	21	16	30	1.95
430540--430593	22	2.5	22	87	3	74	24	27	12	35	1.92
436694--436997	47	6.5	47	87	0	428	22	23	11	43	1.86
436878--436963	27	3.4	27	62	21	69	22	23	11	43	1.86
436945--436983	20	1.9	21	89	5	62	17	28	12	41	1.87
437575--437627	22	2.3	24	78	15	67	26	26	11	35	1.90
438232--438276	2	22.5	2	100	0	90	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
443707--443744	17	2.2	18	86	13	53	34	13	7	44	1.72
453354--453453	51	2.0	51	95	0	182	42	7	3	48	1.45
465059--465373	36	8.8	36	83	6	388	34	18	21	26	1.96
465059--465373	72	4.4	72	89	2	481	34	18	21	26	1.96
465059--465373	108	2.9	107	83	7	429	34	18	21	26	1.96
470925--470952	14	2.0	14	100	0	56	28	7	7	57	1.52
471007--471074	19	3.7	19	84	7	88	35	11	11	41	1.78
471162--471211	17	2.8	18	84	6	75	44	14	8	34	1.74
471126--471207	17	4.7	17	79	5	67	37	17	8	36	1.80
475236--475288	22	2.4	22	100	0	106	41	5	26	26	1.78
482763--482804	15	2.8	15	81	0	57	47	35	16	0	1.47
488808--488839	16	2.0	16	100	0	64	31	25	12	31	1.92
500570--500676	36	2.9	36	87	4	135	45	20	13	20	1.84
510938--511006	3	23.3	3	77	14	72	42	0	0	57	0.98
510938--511006	21	3.3	22	88	9	101	42	0	0	57	0.98
519375--519652	92	3.0	92	94	0	484	28	13	23	34	1.93
522224--522278	22	2.5	22	90	0	92	36	10	12	40	1.79
522725--523391	75	8.9	75	97	0	1223	23	19	22	35	1.96
522725--523383	297	2.2	300	96	1	1216	22	18	22	35	1.95
523564--523632	3	23.3	3	77	14	72	42	0	0	57	0.98
523564--523632	21	3.3	22	88	9	101	42	0	0	57	0.98
526856--526912	28	2.0	29	89	3	89	40	7	15	36	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
537408--537448	21	2.0	21	100	0	82	9	34	31	24	1.88
538071--538105	15	2.3	15	100	0	70	14	22	34	28	1.93
544313--544354	22	1.9	22	95	0	75	9	33	28	28	1.88
544984--545012	15	1.9	15	100	0	58	13	20	34	31	1.92
546961--547221	95	2.7	95	86	3	346	32	18	16	32	1.94
553106--554259	83	13.8	83	82	3	1199	24	18	22	35	1.96
553101--554236	250	4.5	250	82	4	1218	24	18	22	35	1.96
555214--555470	94	2.7	95	87	4	367	30	18	17	33	1.94
558555--558592	19	2.0	20	94	5	69	28	15	28	26	1.96
558560--558715	63	2.5	62	86	4	197	32	19	22	26	1.97

Tables:   1   2   3   4