genome.fa.s9064.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009064.1 Hibiscus syriacus cultivar Beakdansim tig00112487_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  748991

Tables:   1   2   3   4   

This is table  3  of  4  ( 376 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
559171--559476	149	2.0	150	97	1	578	27	15	21	35	1.93
559454--559499	23	2.0	23	91	0	74	21	23	26	28	1.99
562461--570469	808	9.9	808	99	0	15597	30	14	16	38	1.88
570705--570743	16	2.5	16	95	4	71	43	2	0	53	1.14
575283--575329	24	2.0	24	86	0	67	38	2	55	4	1.31
575300--575385	12	7.2	12	75	15	70	37	0	60	2	1.10
575297--575385	18	4.9	18	74	14	69	37	0	60	2	1.09
575301--575355	27	2.0	27	86	6	76	36	0	60	3	1.15
575297--575361	33	2.0	33	84	6	87	36	0	60	3	1.13
575300--575391	45	2.0	45	87	0	130	35	0	61	2	1.08
575300--575373	6	11.8	6	81	8	76	36	0	60	2	1.11
577761--577821	24	2.5	24	100	0	122	34	29	22	13	1.92
585644--585695	22	2.4	22	86	0	68	36	9	9	44	1.70
586417--586741	44	7.3	44	68	17	165	36	15	24	22	1.93
586457--586698	44	5.6	43	73	12	190	37	16	24	21	1.93
586415--586915	132	3.8	132	84	6	631	37	15	23	23	1.93
587243--587280	12	3.4	11	85	14	51	42	0	2	55	1.14
587250--587280	10	3.2	10	95	4	55	41	0	0	58	0.98
587243--587290	22	2.2	22	88	7	71	43	0	2	54	1.12
587250--587290	10	3.8	11	81	12	50	43	0	0	56	0.99
587251--587288	12	3.4	11	86	13	51	44	0	0	55	0.99
589381--599147	4	2444.2	4	87	3	7770	41	21	8	28	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
592740--592780	11	3.6	12	77	9	50	26	17	26	29	1.97
599668--599815	7	21.3	7	69	15	85	79	2	16	2	0.95
599668--599805	9	14.7	9	69	16	84	78	2	15	2	0.96
599660--599816	41	3.9	39	76	15	149	77	3	17	1	0.99
599672--599800	68	1.9	68	81	12	158	79	3	15	2	0.97
599910--599946	15	2.5	15	95	0	65	43	21	18	16	1.88
601763--602022	55	4.7	55	89	0	369	32	6	15	45	1.73
602054--602392	53	6.4	53	84	4	402	29	9	18	42	1.81
602062--602392	159	2.1	159	86	6	458	29	9	18	41	1.82
602430--602543	42	2.7	42	79	4	106	27	17	22	32	1.96
602463--602543	41	2.0	42	82	2	101	25	19	22	32	1.98
602521--602893	145	2.6	145	89	0	559	27	25	16	30	1.96
602930--603328	73	5.5	72	83	6	446	31	20	12	36	1.89
603037--603303	36	7.3	36	67	5	167	29	21	13	35	1.91
603608--604141	139	3.8	139	86	2	705	36	17	20	25	1.94
609474--609516	17	2.6	17	85	3	61	67	2	4	25	1.22
610886--610925	21	1.9	21	89	0	62	50	5	0	45	1.23
610909--611214	37	8.2	37	86	7	431	43	8	2	45	1.48
611831--612030	107	1.9	108	90	3	323	23	13	26	37	1.91
612489--612587	49	2.0	49	98	0	189	48	10	17	24	1.77
613818--613888	35	2.0	35	97	0	133	57	4	15	22	1.55
613822--613878	15	3.5	15	70	21	51	56	3	15	24	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
613830--613888	17	3.4	17	72	21	59	61	5	13	20	1.51
620718--620764	17	2.9	17	76	17	55	68	2	6	23	1.24
622154--622196	23	2.0	21	86	9	59	51	4	0	44	1.22
622159--622261	38	2.9	35	76	8	107	45	6	0	46	1.36
622248--622283	2	18.5	2	94	5	65	47	0	0	52	1.00
622138--622404	128	2.1	124	82	7	308	46	6	2	44	1.42
622265--622395	39	3.5	37	74	13	117	46	6	4	41	1.51
624774--624820	17	2.8	17	90	0	67	44	14	10	29	1.79
624823--624855	7	4.6	7	96	3	57	42	0	0	57	0.98
624944--625007	28	2.2	28	82	15	78	35	0	1	62	1.05
625334--625413	2	40.5	2	97	2	153	50	0	0	50	1.00
632326--632431	40	2.6	42	80	3	126	32	13	14	40	1.84
633446--633510	29	2.2	29	79	15	80	26	18	4	50	1.66
633478--633866	130	3.0	129	84	7	497	23	15	14	46	1.83
634070--634139	33	2.2	33	81	2	79	22	7	4	65	1.35
640495--640603	36	2.9	37	80	10	107	31	21	14	33	1.93
640647--640838	36	5.7	36	65	18	106	29	19	12	38	1.88
640664--640922	67	3.9	67	86	1	367	29	18	13	38	1.89
640661--640922	133	2.0	133	90	1	418	29	18	13	38	1.89
640924--641335	137	3.0	137	81	4	420	28	27	15	27	1.96
641355--641691	122	2.8	122	85	2	435	33	23	15	27	1.95
642607--642671	29	2.2	29	84	10	96	27	15	4	52	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
642639--643041	130	3.1	128	82	5	481	23	16	13	46	1.83
642639--643030	127	3.0	125	79	8	437	23	16	13	46	1.83
643026--643068	16	2.7	16	81	0	59	34	30	4	30	1.78
645878--645946	3	22.7	3	79	8	77	30	1	1	66	1.09
647293--647326	2	17.0	2	100	0	68	50	0	0	50	1.00
647326--647359	2	17.0	2	100	0	68	0	0	50	50	1.00
648302--648345	23	1.9	23	90	0	70	18	27	27	27	1.98
651908--651945	19	2.0	19	90	10	60	52	2	21	23	1.59
663216--663288	31	2.3	32	90	2	112	27	10	13	47	1.76
663932--663972	21	2.0	21	85	9	57	39	9	0	51	1.35
664276--664343	32	2.2	32	81	7	86	22	32	14	30	1.94
671918--672521	299	2.0	299	99	0	1183	33	15	18	33	1.92
678010--678048	20	2.0	20	89	0	60	33	10	23	33	1.88
686544--686582	20	2.0	20	89	0	60	33	10	23	33	1.88
688435--688485	18	2.9	18	91	2	77	3	41	0	54	1.19
689970--690008	21	1.9	21	94	5	71	38	10	20	30	1.86
690716--690745	14	2.1	14	93	0	51	43	26	0	30	1.55
689408--691323	669	2.9	665	90	2	2925	31	16	14	37	1.88
692480--692518	20	2.0	20	94	0	69	33	12	12	41	1.82
694452--694492	15	2.8	15	79	17	50	9	19	0	70	1.14
696789--696898	32	3.4	32	83	2	123	37	13	18	30	1.89
696852--696963	32	3.5	32	86	1	154	33	16	20	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
696859--697000	63	2.2	64	82	3	180	34	14	20	30	1.93
701739--701771	16	2.1	16	100	0	66	27	18	12	42	1.85
703127--703200	37	2.0	37	86	5	105	22	13	21	41	1.88
711269--711425	20	8.0	20	85	3	212	28	18	5	47	1.71
711269--711425	39	4.0	39	89	2	208	28	18	5	47	1.71
713201--713377	90	2.0	90	95	0	318	37	28	3	30	1.73
713355--713399	20	2.3	20	88	3	65	35	15	2	46	1.58
715257--715307	26	2.0	25	85	11	68	5	29	0	64	1.17
717046--717138	32	2.9	32	86	0	132	32	17	16	34	1.92
717046--717191	32	4.6	31	78	10	118	32	15	17	33	1.92
717661--717714	23	2.4	23	87	3	74	25	16	20	37	1.93
718053--718096	12	3.6	12	93	6	79	22	0	18	59	1.38
719770--719852	5	17.0	5	97	2	152	59	0	0	40	0.98
720103--720451	20	17.5	20	86	4	447	34	26	18	20	1.96
721131--721177	24	2.0	24	87	8	69	25	14	21	38	1.92
721352--721376	12	2.1	12	100	0	50	72	0	28	0	0.86
722444--722505	28	2.2	28	100	0	124	38	12	17	30	1.88
723668--723973	19	17.4	19	78	18	351	46	18	21	13	1.83
723721--723798	14	4.8	15	71	22	52	43	19	24	12	1.86
723696--723973	52	5.2	52	91	6	363	46	17	21	14	1.83
723668--724011	142	2.5	137	90	6	516	45	18	21	14	1.84
723668--723995	52	6.3	54	86	11	294	46	18	21	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
723668--723995	33	9.5	33	79	16	257	46	18	21	14	1.84
724002--724103	19	5.6	19	85	12	151	14	23	17	44	1.86
724209--724245	14	2.6	14	91	0	65	45	21	0	32	1.52
726157--726220	19	3.3	19	80	10	67	48	25	15	10	1.77
726194--726288	33	2.9	33	91	0	163	46	20	21	12	1.83
726213--726269	14	3.7	14	75	20	51	45	21	21	12	1.83
726287--726414	19	7.3	19	73	19	116	8	17	28	45	1.78
726287--726377	32	2.8	34	90	6	143	7	18	28	45	1.77
726458--726919	93	5.1	93	96	2	850	46	19	12	21	1.82
726458--726919	185	2.5	186	96	2	850	46	19	12	21	1.82

Tables:   1   2   3   4