genome.fa.s9066.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009066.1 Hibiscus syriacus cultivar Beakdansim tig00112490_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  821833

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 548 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156415--156535	42	3.1	42	60	24	100	30	22	15	31	1.95
158011--158073	19	3.2	19	75	4	54	55	12	0	31	1.37
157972--158173	64	2.9	68	79	16	209	57	11	1	29	1.43
158031--158194	76	2.2	75	86	3	231	56	10	2	30	1.46
158827--158921	28	3.5	28	65	16	74	21	22	13	43	1.87
158964--159003	15	2.7	15	100	0	80	70	5	0	25	1.08
159038--159077	20	2.1	19	90	4	62	82	5	2	10	0.91
164550--164663	58	2.0	58	100	0	228	33	10	16	39	1.83
164792--164833	21	2.0	21	90	0	66	71	0	9	19	1.13
165461--165523	19	3.2	19	77	4	63	53	14	0	31	1.41
165426--165623	64	2.8	68	80	14	201	58	12	1	27	1.44
165481--165645	76	2.2	76	87	3	244	56	10	2	29	1.46
167498--167543	19	2.4	19	85	3	65	80	4	2	13	0.95
177300--177352	3	17.0	3	88	7	79	62	0	0	37	0.96
177300--177352	25	2.1	25	96	0	97	62	0	0	37	0.96
180936--181001	33	2.1	31	83	8	80	37	22	15	24	1.92
185532--185597	33	2.1	31	86	8	89	36	24	15	24	1.93
185698--185858	81	2.0	81	100	0	322	45	19	11	23	1.83
186854--186882	15	1.9	15	100	0	58	48	0	24	27	1.51
188806--188848	13	3.3	12	81	12	50	46	0	0	53	1.00
188772--188848	26	3.0	26	71	17	72	42	0	0	57	0.99
192953--192980	14	2.0	14	100	0	56	28	0	14	57	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
193040--193082	18	2.4	19	80	7	54	34	11	4	48	1.60
193103--193174	33	2.1	34	94	2	128	36	4	8	51	1.51
195488--195520	12	2.8	12	86	4	50	60	0	3	36	1.12
195505--195568	33	1.9	33	87	6	94	53	0	0	46	1.00
195781--195917	59	2.3	56	83	12	152	20	37	25	16	1.93
197410--197452	21	2.0	21	100	0	86	18	9	30	41	1.82
200337--200393	3	19.7	3	86	13	84	64	1	0	33	1.04
204062--204267	21	9.7	21	79	4	191	22	15	27	33	1.95
204694--204724	15	2.0	16	93	6	55	25	6	9	58	1.54
206083--206117	18	1.9	18	94	0	61	17	20	34	28	1.95
216862--216994	71	1.9	72	93	1	232	40	9	23	27	1.84
217506--217545	20	2.0	20	85	0	53	37	5	2	55	1.35
217863--217981	32	3.5	33	77	13	134	41	36	10	12	1.77
217863--217987	37	3.5	36	81	10	132	40	36	10	12	1.77
218567--218624	16	3.6	16	76	0	53	46	15	1	36	1.56
218844--218882	3	13.7	3	84	10	55	69	0	0	30	0.89
218844--218882	14	2.5	17	84	16	57	69	0	0	30	0.89
219264--219327	12	5.7	12	66	26	50	39	18	23	18	1.93
219261--219325	22	3.0	22	100	0	130	40	18	23	18	1.92
219956--220022	33	2.0	33	100	0	134	29	26	17	25	1.98
222386--222440	20	2.8	20	86	5	69	29	23	20	27	1.99
222437--222589	75	2.1	75	87	1	218	37	13	14	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
223163--223202	17	2.3	17	86	4	53	55	0	5	40	1.22
224400--224458	29	2.0	29	100	0	118	25	16	30	27	1.97
228673--228773	31	3.2	32	78	14	120	31	16	18	32	1.94
231818--231856	17	2.3	18	86	8	55	30	5	30	33	1.79
231978--232054	32	2.4	33	74	8	79	36	18	15	29	1.92
237924--238025	45	2.3	45	98	0	195	46	10	1	41	1.50
243205--243250	14	3.3	14	87	0	65	28	23	28	19	1.98
245052--245097	25	1.9	25	86	8	69	50	8	6	34	1.59
251859--251902	21	2.0	22	82	4	54	29	6	22	40	1.80
252636--252680	17	2.6	17	85	0	63	42	8	13	35	1.75
252795--252833	20	2.0	20	84	0	51	41	17	10	30	1.83
257171--257657	243	2.0	242	98	1	949	35	22	22	18	1.95
260535--260600	24	2.8	24	83	2	89	37	19	13	28	1.90
265921--265970	19	2.5	20	87	6	75	74	0	4	22	0.99
266008--266060	28	1.9	27	84	3	70	67	0	0	32	0.91
266711--266875	72	2.2	73	84	6	215	60	11	0	27	1.35
267614--267653	19	2.0	20	85	4	55	57	12	0	30	1.36
267631--267678	25	2.0	24	83	4	60	62	12	2	22	1.40
269399--269464	25	2.6	25	80	4	78	66	4	6	22	1.32
272360--272405	19	2.4	19	85	3	56	69	2	6	21	1.22
272180--272636	230	2.0	230	94	0	799	42	8	18	30	1.79
272590--272639	19	2.5	20	87	6	75	72	0	6	22	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
272675--272731	29	2.1	25	76	17	60	70	0	1	28	0.98
272699--272728	11	2.7	11	94	0	51	80	0	0	20	0.72
273334--273547	76	2.9	76	88	3	292	58	12	1	28	1.42
274537--274574	20	1.9	20	94	0	67	28	13	26	31	1.93
279751--279826	3	25.7	3	97	2	145	65	0	0	34	0.93
287168--287483	150	2.1	149	95	1	571	34	21	18	26	1.96
288527--288561	19	1.9	17	88	11	52	60	0	37	2	1.12
294048--294092	23	2.0	23	86	0	63	26	26	26	20	1.99
294060--294375	150	2.1	149	95	1	571	34	21	18	26	1.96
295417--295451	19	1.9	17	88	11	52	60	0	37	2	1.12
309466--309500	3	12.3	3	88	11	56	31	0	0	68	0.90
309467--309500	14	2.4	14	95	0	59	32	0	0	67	0.91
309465--309519	20	2.8	18	81	13	56	30	0	1	67	1.01
311212--311256	11	4.0	11	82	11	56	17	20	8	53	1.70
322948--322986	21	1.9	20	89	5	60	35	20	17	25	1.95
332544--332721	90	2.0	90	92	0	293	44	7	11	36	1.68
339667--339833	90	1.9	90	92	0	280	46	5	13	34	1.67
349037--349217	95	1.9	95	89	2	283	34	16	24	24	1.95
349056--349255	95	2.1	95	84	5	253	34	15	23	26	1.95
349639--350112	46	10.3	46	78	8	375	45	10	19	24	1.82
349744--349791	20	2.4	20	100	0	96	41	10	25	22	1.85
349829--349892	26	2.5	26	97	0	119	48	9	18	23	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
349975--350051	20	3.5	20	71	19	73	42	6	25	24	1.78
349952--350034	26	3.5	24	71	20	75	43	8	21	26	1.81
349869--350151	138	2.1	138	81	4	329	44	9	19	26	1.82
356286--356488	95	2.1	96	85	2	293	35	16	23	24	1.94
356876--357336	46	10.0	46	86	1	607	44	12	19	22	1.85
356876--357336	93	5.0	92	85	2	584	44	12	19	22	1.85
357027--357100	20	3.4	20	70	20	67	45	13	22	17	1.83
356876--357336	139	3.3	138	87	2	620	44	12	19	22	1.85
357120--357194	20	3.5	20	73	19	69	44	9	24	22	1.82
357269--357341	20	3.3	20	67	20	56	42	12	20	24	1.86
364372--364461	34	2.6	35	83	3	101	44	16	18	20	1.87
364530--364611	36	2.3	35	80	2	83	42	12	19	25	1.86
364498--364880	102	3.8	101	84	4	441	39	12	18	29	1.88
364656--365179	167	3.1	167	95	0	908	41	12	17	28	1.86
364783--364929	65	2.3	65	89	4	217	40	12	18	28	1.86
364840--365031	102	1.9	102	85	4	271	42	13	18	25	1.87
364950--365098	65	2.3	65	86	4	203	38	12	19	28	1.89
365325--365524	106	1.9	106	82	0	256	23	21	23	32	1.98
365444--365585	63	2.3	63	92	0	230	23	17	24	34	1.96
366179--366290	32	3.5	32	86	4	147	37	20	13	28	1.90
367336--367395	20	3.0	21	78	14	72	8	16	5	70	1.31
370221--370299	25	3.2	24	77	10	70	70	0	8	20	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
370311--370372	19	3.3	17	73	20	52	79	1	6	12	1.00
370287--370383	39	2.3	43	76	21	107	74	2	7	16	1.14
370306--370398	21	4.3	21	73	18	68	78	2	5	13	1.02
370221--370386	5	32.6	5	69	20	53	73	1	7	17	1.13
370305--370398	38	2.4	39	79	8	95	77	2	5	14	1.04
370318--370431	7	16.1	7	70	20	51	77	1	4	16	1.02
370306--370426	47	2.7	43	77	20	124	76	1	4	17	1.02
370380--370444	34	1.9	34	90	6	105	69	0	3	27	1.03
370350--370499	9	16.8	9	70	17	50	66	2	2	29	1.13
373558--373582	10	2.5	10	100	0	50	52	20	8	20	1.71

Tables:   1   2   3   4   5