genome.fa.s9066.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009066.1 Hibiscus syriacus cultivar Beakdansim tig00112490_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  821833

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 548 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
777113--777137	13	1.9	13	100	0	50	8	48	24	20	1.76
777148--777223	29	2.6	29	82	0	89	21	9	26	43	1.82
783536--783565	11	2.8	11	95	5	53	16	20	26	36	1.93
785827--785901	28	2.6	29	80	4	89	44	26	8	21	1.80
785899--785958	26	2.4	25	80	2	75	21	25	38	15	1.92
785950--785993	10	4.6	10	86	8	65	34	29	22	13	1.93
785950--785994	19	2.4	19	96	0	81	33	28	22	15	1.95
788789--788945	20	7.8	20	73	6	93	38	25	17	19	1.93
788789--788945	41	3.9	41	70	11	126	38	25	17	19	1.93
788912--789121	20	10.5	20	79	6	183	37	24	18	20	1.94
788932--789121	60	3.2	60	83	4	206	36	24	18	20	1.95
789804--789850	24	2.0	24	87	8	69	25	14	21	38	1.92
790023--790047	12	2.1	12	100	0	50	72	0	28	0	0.86
792326--792415	34	2.7	33	86	10	121	45	20	20	14	1.85
792307--792471	52	3.1	53	86	4	174	44	20	20	14	1.86
792326--792545	33	6.5	32	75	16	144	45	18	22	14	1.85
792358--792523	52	3.2	52	88	5	221	45	17	22	13	1.84
792326--792545	85	2.6	85	94	2	379	45	18	22	14	1.85
792393--792545	52	2.9	52	89	5	213	45	17	22	14	1.85
792551--792666	53	2.2	53	98	1	225	13	24	18	43	1.86
792569--792666	19	5.4	19	84	13	143	14	22	17	45	1.84
792767--792804	13	2.8	14	92	4	60	42	21	0	36	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
792869--792904	12	3.0	12	83	0	54	63	16	0	19	1.30
794762--794841	33	2.4	32	88	10	117	43	22	22	11	1.84
794726--794831	19	5.8	19	79	11	114	45	24	18	11	1.82
794986--795357	93	4.1	93	96	2	700	45	19	12	21	1.83
794986--795357	183	2.0	185	96	2	698	45	19	12	21	1.83
797046--797135	14	5.7	14	72	23	72	44	22	24	8	1.81
797038--797152	33	3.5	33	100	0	230	46	20	23	9	1.79
797060--797157	19	5.7	19	71	22	99	44	21	23	10	1.82
797169--797225	14	3.7	14	75	20	60	10	24	21	43	1.83
797166--797230	33	2.0	33	96	0	121	10	24	20	44	1.83
797209--797286	41	1.9	41	97	0	147	12	25	16	44	1.83
797210--797285	21	3.7	21	83	3	109	11	25	17	46	1.82
797365--797435	33	2.2	33	94	0	124	47	16	23	11	1.79
797615--797669	22	2.5	22	75	0	65	20	16	38	25	1.92
797815--798008	20	9.6	20	79	5	203	19	20	24	35	1.95
797815--798008	60	3.2	60	83	0	244	19	20	24	35	1.95
797975--798072	20	4.8	20	77	3	79	21	18	22	37	1.94
797975--798132	61	2.6	60	78	7	169	18	17	24	39	1.92
797975--798131	41	3.9	41	70	14	110	19	17	24	38	1.92
802228--802428	55	3.5	55	70	16	179	35	25	15	23	1.94
802283--802496	66	3.4	66	68	16	209	35	25	15	24	1.94
802142--802498	121	3.0	121	94	0	624	35	25	15	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
802558--802846	85	3.5	85	83	4	345	36	21	17	24	1.95
803368--803394	2	13.5	2	100	0	54	51	0	0	48	1.00
804427--804487	27	2.3	26	83	13	79	37	0	3	59	1.14
804487--804540	21	2.6	21	96	0	99	18	9	0	72	1.11
804637--804751	19	6.7	17	72	21	80	18	2	4	74	1.10
804642--804670	14	2.1	14	100	0	58	20	0	6	72	1.07
804639--804730	34	2.8	33	76	20	93	16	2	5	76	1.08
804681--804737	20	2.9	19	85	12	64	14	5	3	77	1.08
804631--804761	9	14.9	9	70	15	55	19	2	3	74	1.09
804631--804819	47	4.0	45	76	12	125	17	6	3	73	1.18
805450--805672	121	1.8	121	93	0	383	22	14	26	36	1.93
805626--805794	65	2.7	64	85	5	238	26	14	21	37	1.92
805816--806172	64	5.6	64	87	2	502	30	14	21	34	1.92
805818--806172	191	1.9	192	90	0	568	30	14	20	34	1.92
810881--811016	33	4.1	37	74	20	97	75	2	5	16	1.11
810906--811021	5	23.4	5	69	23	52	75	3	4	16	1.09
810863--811020	9	16.9	9	70	16	56	74	2	6	16	1.13
810885--811012	13	9.5	13	71	18	66	75	3	4	17	1.11
811164--811216	2	28.5	2	83	14	69	54	0	0	45	0.99
811163--811227	10	6.3	11	83	13	77	56	0	0	43	0.99
811254--811288	17	2.1	17	88	0	52	62	11	11	14	1.54
812308--812346	2	20.0	2	85	15	55	48	0	2	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
818199--818238	19	2.1	19	90	0	62	77	7	12	2	1.07
819898--820342	207	2.1	206	80	5	479	32	26	16	24	1.96

Tables:   1   2   3   4   5

The End!