genome.fa.s9066.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009066.1 Hibiscus syriacus cultivar Beakdansim tig00112490_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  821833

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 548 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
568687--568784	24	4.1	24	75	0	88	8	9	39	42	1.66
569003--569307	101	3.0	100	81	8	337	33	5	27	32	1.81
569009--569326	102	3.1	101	81	9	340	33	5	28	32	1.81
569481--569540	9	6.2	9	71	21	50	40	5	10	45	1.60
569471--569527	29	2.0	29	96	0	105	40	5	10	43	1.62
569490--569540	20	2.5	21	84	12	63	39	5	9	45	1.62
569560--569616	30	2.0	30	82	6	73	43	8	3	43	1.52
569619--569648	7	4.3	7	100	0	60	46	40	0	13	1.43
569672--569696	11	2.3	11	100	0	50	36	0	8	56	1.29
569659--569791	33	4.2	33	71	16	111	45	3	3	48	1.36
573790--573871	29	2.8	29	94	1	137	32	14	9	42	1.79
578560--578641	29	2.8	29	90	1	128	34	13	9	42	1.77
580499--580533	2	17.5	2	93	0	61	51	0	45	2	1.16
580932--580965	14	2.4	14	90	0	50	44	8	0	47	1.34
581151--581226	39	1.9	39	89	0	116	30	15	28	25	1.96
586023--586106	41	2.0	41	86	0	114	21	9	34	34	1.86
586576--586609	12	2.8	12	90	4	50	26	2	5	64	1.30
588646--588682	18	2.1	18	89	0	56	8	5	16	70	1.30
589970--590026	3	18.7	3	92	3	96	3	29	0	66	1.08
590659--590753	22	4.6	20	79	15	88	28	16	28	26	1.97
590679--590753	22	3.5	22	89	3	109	29	18	25	26	1.98
590601--590812	117	1.8	118	87	3	320	30	16	25	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
591167--591515	59	6.0	59	89	3	510	33	12	20	34	1.89
591886--592490	68	8.9	68	89	0	895	32	12	22	32	1.92
592451--592668	81	2.7	81	88	6	318	37	10	24	27	1.88
595778--596582	39	20.7	39	87	1	1064	36	16	17	30	1.91
596645--596899	36	7.1	36	65	13	139	41	12	14	32	1.82
596585--597021	74	6.0	72	79	13	430	39	13	15	31	1.86
598219--598294	14	5.8	13	74	19	61	5	10	6	77	1.11
598212--598304	39	2.4	38	82	12	109	4	10	6	78	1.07
598212--598309	26	3.8	25	76	20	85	5	10	7	77	1.11
608465--608499	2	17.5	2	100	0	70	48	0	0	51	1.00
609024--609067	2	23.5	2	82	13	58	52	0	2	45	1.13
609021--609070	12	4.1	12	74	20	50	54	0	2	44	1.11
617289--617368	23	3.5	23	92	0	133	28	26	26	18	1.98
618569--618730	64	2.5	63	80	6	182	25	24	17	32	1.97
621877--621960	23	3.7	23	91	0	141	29	28	25	16	1.97
624179--624260	42	2.0	42	87	0	119	30	17	25	26	1.97
626308--626365	26	2.2	26	82	11	66	36	18	22	22	1.95
628587--628620	17	2.0	17	88	0	50	79	5	5	8	1.05
630038--630143	10	10.0	10	68	15	52	61	18	9	10	1.55
630061--630141	43	1.9	42	89	2	126	65	19	6	8	1.42
630060--630143	20	4.1	20	72	10	62	64	19	5	10	1.45
630076--630139	33	1.9	33	83	0	83	65	20	6	7	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
630242--630292	24	2.1	24	85	7	68	62	11	11	13	1.54
630259--630288	14	2.1	14	93	0	51	63	10	13	13	1.52
633693--633789	20	4.8	20	69	5	52	41	10	18	29	1.84
634508--634966	227	2.0	226	91	1	738	36	6	20	36	1.80
636366--636509	63	2.3	63	77	12	143	34	22	18	24	1.97
644371--644410	18	2.2	18	86	0	53	15	45	25	15	1.84
645844--646321	199	2.4	198	83	4	604	39	12	12	35	1.81
646743--646793	18	2.8	18	87	0	75	27	27	9	35	1.88
649200--649243	13	3.5	12	81	9	52	31	9	4	54	1.52
649200--649243	19	2.3	19	84	0	61	31	9	4	54	1.52
650649--651122	180	2.6	179	82	6	548	40	12	12	33	1.81
651318--651361	20	2.1	21	84	12	56	31	4	18	45	1.69
651365--651455	20	4.6	20	76	6	87	48	10	13	27	1.75
651365--651455	40	2.3	40	90	3	139	48	10	13	27	1.75
653587--653616	15	2.0	15	93	0	51	40	23	13	23	1.90
655563--655592	15	2.0	15	93	0	51	40	23	13	23	1.90
657540--657569	15	2.0	15	93	0	51	40	23	13	23	1.90
659515--659544	15	2.0	15	93	0	51	40	23	13	23	1.90
659838--660158	130	2.5	127	82	4	385	39	11	14	34	1.82
659838--660210	130	2.9	125	76	9	349	39	12	15	33	1.84
660068--660633	200	2.8	200	84	4	687	39	13	12	34	1.82
660816--661502	226	3.0	226	85	2	923	33	15	12	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
664979--665022	19	2.2	20	88	11	65	25	38	22	13	1.91
666504--666956	221	2.0	225	91	3	745	43	3	7	45	1.47
670707--670800	35	2.7	35	83	6	118	31	21	10	36	1.88
670878--670939	32	2.0	32	87	3	90	27	17	12	41	1.86
670969--671315	144	2.5	138	79	5	365	37	17	10	35	1.83
672827--672997	85	2.0	85	95	0	306	31	14	17	36	1.90
675228--675269	20	2.0	21	86	13	61	42	0	28	28	1.56
686938--687212	49	5.7	49	81	5	281	29	22	14	33	1.94
686966--687189	97	2.3	97	84	5	276	27	22	15	34	1.94
687030--687208	97	1.8	98	86	1	261	30	23	15	30	1.95
693731--694030	98	3.1	98	82	4	322	31	21	12	34	1.91
693712--694008	49	6.1	48	82	4	272	29	21	13	35	1.92
700843--700874	3	10.3	3	93	6	55	62	0	0	37	0.95
701265--702023	139	5.5	139	82	0	808	24	16	25	33	1.96
702355--702490	65	2.1	63	82	9	161	40	11	14	33	1.83
702302--702486	101	1.8	101	89	2	291	41	11	15	31	1.84
705116--705173	6	9.8	6	73	17	50	1	13	3	81	0.91
705115--705174	13	4.5	13	82	13	68	1	13	3	81	0.89
705104--705176	13	5.5	12	80	13	65	1	13	2	82	0.85
710485--710525	3	13.3	3	94	5	73	63	0	0	36	0.95
711316--711362	18	2.8	17	77	6	51	61	2	4	31	1.27
712230--712328	40	2.5	38	78	12	110	29	23	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
712710--712748	20	2.0	20	94	0	69	25	12	43	17	1.85
712788--712869	33	2.6	31	83	7	94	14	23	24	37	1.92
713105--713130	13	2.0	13	100	0	52	23	0	23	53	1.46
715637--715737	28	3.6	28	95	0	175	46	4	5	42	1.49
715664--716063	14	31.1	14	70	19	300	49	5	4	41	1.45
715706--715964	37	6.9	37	92	4	439	50	5	3	40	1.42
715719--716026	51	6.3	51	74	15	294	50	5	4	40	1.44
715813--716010	23	8.6	23	71	17	126	49	5	4	41	1.43
715706--716073	8	48.9	8	62	23	61	50	4	4	40	1.44
715974--716067	37	2.5	37	98	0	179	50	5	4	40	1.45
715770--716059	88	3.3	88	83	8	376	49	5	4	41	1.44
719314--719421	51	2.2	47	88	8	153	24	17	13	44	1.85
719493--719534	21	2.0	21	100	0	84	23	19	14	42	1.87
719581--719698	32	3.7	32	96	0	209	35	33	24	6	1.82
719680--719787	47	2.3	47	98	0	207	37	23	20	19	1.95
720152--720221	2	35.0	2	100	0	140	50	0	0	50	1.00
723926--723970	2	22.5	2	95	0	81	51	2	0	46	1.13
726491--726572	41	2.0	41	100	0	164	34	21	9	34	1.87
731010--731061	20	2.6	20	90	0	86	25	32	9	32	1.88
736813--736862	20	2.5	20	80	6	66	44	16	2	38	1.59
742355--742444	29	3.2	29	60	12	69	32	10	17	40	1.83
745340--745376	18	2.0	19	89	5	58	32	5	2	59	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
749561--749615	27	2.0	27	100	0	110	45	7	18	29	1.76
749681--749715	18	1.9	18	100	0	70	17	22	11	48	1.79
750489--750534	13	3.5	13	80	13	58	36	0	15	47	1.45
750487--750545	28	2.2	26	79	8	64	35	0	15	49	1.45
755733--756156	215	2.0	209	95	4	762	41	12	13	32	1.81
758906--758969	29	2.2	29	77	5	67	32	21	12	32	1.91
762422--762540	50	2.4	50	88	0	175	30	31	9	29	1.88
767082--767123	18	2.4	17	84	8	57	76	0	2	21	0.90
770850--770881	2	16.5	2	93	6	57	50	0	0	50	1.00
777097--777134	18	2.1	18	90	9	60	13	50	21	15	1.78

Tables:   1   2   3   4   5