genome.fa.s9067.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009067.1 Hibiscus syriacus cultivar Beakdansim tig00112491_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2329927

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2138961--2139025	32	2.0	32	91	5	105	55	12	23	9	1.65
2140316--2140686	55	6.9	54	87	6	411	28	15	25	30	1.95
2140366--2140673	111	2.8	111	93	1	507	28	16	25	30	1.96
2156859--2156951	31	3.1	29	73	14	80	37	8	15	38	1.78
2159391--2159423	17	1.9	17	93	0	57	6	12	9	72	1.26
2160033--2160078	19	2.4	19	92	0	74	10	10	10	67	1.43
2163247--2163282	16	2.2	16	95	0	63	36	30	8	25	1.85
2163719--2164342	165	3.8	165	87	1	860	29	25	20	24	1.99
2163503--2164361	413	2.1	409	88	2	1238	30	25	20	23	1.98
2179044--2179080	2	18.5	2	100	0	74	51	0	0	48	1.00
2180103--2180195	31	3.1	29	73	14	80	37	8	15	38	1.78
2182747--2182807	33	1.9	33	93	6	108	32	14	8	44	1.75
2185238--2185276	15	2.7	14	84	7	51	48	23	0	28	1.51
2185376--2185441	23	2.9	23	84	8	89	33	21	27	18	1.96
2185468--2185807	170	2.0	170	98	0	662	37	20	11	30	1.88
2187820--2187880	29	2.2	27	81	16	72	42	4	4	47	1.46
2193502--2193772	136	2.0	133	91	2	436	23	18	12	45	1.84
2206035--2206083	13	3.6	14	76	15	50	28	24	2	44	1.65
2206035--2206087	25	2.0	26	82	13	65	30	22	1	45	1.63
2206749--2206807	20	2.7	22	89	10	86	25	22	20	32	1.98
2211178--2211235	20	2.9	20	100	0	116	24	24	20	31	1.98
2211307--2211359	19	2.8	19	100	0	106	22	30	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2212135--2212179	2	22.5	2	100	0	90	51	0	0	48	1.00
2224488--2224832	41	8.5	40	78	8	227	19	20	23	36	1.95
2224513--2224585	20	3.6	20	72	3	74	12	21	27	38	1.89
2224492--2224597	20	5.2	20	64	12	54	18	19	26	34	1.95
2224471--2224727	142	1.8	142	92	1	435	20	20	23	35	1.96
2224655--2224788	61	2.2	61	97	0	250	16	20	23	39	1.92
2224513--2224829	102	3.1	102	85	5	419	17	21	23	36	1.94
2224777--2224851	21	3.6	21	75	12	73	14	24	25	36	1.93
2224655--2224809	61	2.5	61	90	3	186	16	21	23	38	1.93
2224716--2224898	41	4.4	41	89	4	228	16	22	21	38	1.93
2224760--2224914	41	3.8	41	90	3	190	16	21	21	39	1.92
2224992--2225034	6	7.2	6	100	0	86	34	48	16	0	1.46
2225524--2225555	6	5.3	6	92	0	55	0	15	46	37	1.46
2225677--2225912	20	11.6	20	77	7	242	38	24	22	14	1.91
2225648--2225937	41	7.0	41	88	5	383	38	23	22	15	1.93
2226627--2226704	33	2.4	33	97	2	149	11	10	42	35	1.75
2227240--2227278	17	2.2	17	86	4	51	30	25	10	33	1.89
2227440--2227494	23	2.5	22	80	11	60	32	7	5	54	1.51
2234046--2234097	21	2.5	21	90	0	77	19	9	5	65	1.42
2238596--2238727	35	3.8	34	84	4	147	37	2	21	38	1.67
2243806--2243902	45	2.1	47	83	7	119	28	8	19	43	1.80
2253552--2253640	26	3.5	26	69	25	73	70	1	19	8	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2253560--2253655	15	5.9	16	74	23	78	72	1	17	8	1.14
2253621--2253653	7	4.7	7	92	0	57	78	0	12	9	0.95
2253619--2253654	14	2.5	15	95	4	65	77	0	13	8	0.98
2253567--2253657	33	2.8	30	78	14	92	73	1	17	7	1.12
2254982--2255303	55	6.1	51	87	6	365	28	15	26	29	1.96
2254995--2255347	55	6.6	55	89	2	361	29	15	26	28	1.96
2255117--2255378	110	2.4	111	82	5	316	29	15	24	30	1.96
2282515--2282552	16	2.4	16	100	0	76	42	18	18	21	1.90
2290687--2290727	21	1.9	22	85	5	57	53	9	2	34	1.47
2290846--2290875	15	2.0	15	93	0	51	70	0	3	26	1.03
2294774--2294835	23	2.8	22	70	18	56	53	4	4	37	1.44
2297959--2297992	3	11.3	3	100	0	68	67	0	0	32	0.91
2298164--2298472	117	2.8	112	88	6	423	24	20	15	40	1.90
2298394--2298563	91	1.9	89	85	7	238	24	18	15	41	1.89
2298481--2298829	136	2.6	136	91	0	547	24	21	17	35	1.95
2299703--2299756	17	2.9	20	81	13	62	7	12	0	79	0.92
2299715--2299765	10	5.3	10	77	22	56	7	11	0	80	0.90
2299701--2299794	16	5.6	16	77	16	84	7	13	1	77	1.03
2299700--2299792	33	2.7	34	80	11	93	7	15	1	76	1.06
2312929--2312965	3	12.3	3	100	0	74	67	0	0	32	0.91
2313718--2313757	21	1.9	21	85	10	55	42	17	12	27	1.85
2318921--2318961	18	2.3	18	100	0	82	26	36	9	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2321589--2321808	21	10.7	19	70	12	98	35	22	18	22	1.95
2321592--2321715	61	2.0	61	92	0	203	36	22	18	22	1.95
2321638--2321789	42	3.7	41	86	5	211	38	22	17	22	1.93
2321589--2321808	103	2.1	102	83	6	266	35	22	18	22	1.95

Tables:   1   2   3   4   5   6   7   8   9   10

The End!