genome.fa.s9067.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009067.1 Hibiscus syriacus cultivar Beakdansim tig00112491_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2329927

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  8  of  10  ( 1150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1566380--1566574	38	5.2	37	82	11	143	44	3	7	45	1.48
1566381--1566598	75	2.9	73	79	13	210	43	4	6	45	1.49
1566448--1566637	38	5.2	36	86	8	219	46	4	6	42	1.51
1567531--1567580	22	2.2	23	92	3	84	50	18	14	18	1.79
1574327--1574374	23	2.1	23	88	0	69	35	12	18	33	1.89
1575102--1575138	18	2.1	18	89	0	56	51	10	5	32	1.60
1575342--1575406	23	2.8	23	90	0	94	38	18	7	35	1.80
1575764--1575815	23	2.3	22	90	6	77	44	19	1	34	1.62
1575774--1575836	23	2.7	23	90	0	90	38	19	6	36	1.77
1575344--1576365	430	2.4	431	99	0	2021	37	13	8	40	1.74
1576194--1576245	23	2.3	22	90	6	77	44	19	1	34	1.62
1576204--1576266	23	2.7	23	90	0	90	38	19	6	36	1.77
1576806--1578428	199	8.1	199	97	0	3052	32	15	15	37	1.88
1576806--1578428	399	4.1	399	97	0	3072	32	15	15	37	1.88
1578510--1578554	19	2.4	19	92	0	72	57	8	2	31	1.41
1580345--1580410	33	2.0	33	87	0	96	24	45	1	28	1.62
1582518--1582570	24	2.2	24	83	6	63	26	7	13	52	1.66
1582883--1582928	20	2.3	20	89	10	76	17	17	10	54	1.70
1590256--1590505	36	6.9	36	90	0	383	31	24	26	18	1.97
1591043--1591096	27	2.0	27	96	0	99	22	20	11	46	1.82
1594702--1594750	20	2.5	20	96	0	89	44	24	12	18	1.84
1595281--1595334	20	2.8	20	88	2	83	12	16	22	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1596975--1597024	21	2.4	21	89	0	73	24	14	30	32	1.94
1597456--1597548	42	2.2	42	90	3	143	22	37	18	21	1.94
1597456--1597548	21	4.4	21	76	9	91	22	37	18	21	1.94
1599119--1599198	29	2.8	29	88	3	117	31	23	16	28	1.96
1599429--1599464	18	2.0	18	94	0	63	19	2	22	55	1.56
1601492--1601806	31	10.2	31	95	0	567	39	11	15	34	1.83
1604121--1604167	24	2.0	24	95	0	85	34	17	21	27	1.95
1604125--1604176	24	2.2	24	85	0	68	36	19	19	25	1.95
1604288--1604321	12	2.8	12	90	0	50	14	0	29	55	1.40
1605088--1605175	20	4.5	19	76	8	70	36	12	22	28	1.91
1614798--1614845	22	2.1	22	92	3	78	37	4	12	45	1.61
1622962--1623115	64	2.4	64	76	9	163	36	19	17	26	1.94
1623838--1623895	19	3.1	19	100	0	116	48	0	31	20	1.50
1627141--1627200	31	1.9	31	93	0	102	33	10	28	28	1.89
1631289--1631321	17	1.9	17	93	0	57	51	0	3	45	1.16
1632499--1632558	26	2.5	24	77	17	61	36	1	1	60	1.17
1646963--1647010	21	2.3	22	82	7	55	22	43	20	12	1.86
1647374--1647423	25	2.0	25	88	7	75	54	4	4	38	1.38
1667812--1667999	59	3.2	60	78	5	168	30	22	5	40	1.77
1668120--1668234	60	1.9	60	80	7	135	40	3	21	33	1.70
1669561--1669585	8	3.1	8	100	0	50	24	28	0	48	1.52
1670183--1670235	27	1.9	27	84	3	70	39	7	1	50	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1672874--1672899	2	13.0	2	100	0	52	50	0	0	50	1.00
1678328--1678382	27	2.0	29	82	7	69	41	3	3	50	1.37
1678468--1678505	2	19.0	2	100	0	76	50	0	0	50	1.00
1678560--1678601	2	21.0	2	100	0	84	50	0	0	50	1.00
1687370--1687491	63	1.9	64	86	1	174	22	12	10	54	1.68
1687381--1687528	63	2.3	63	82	2	172	28	12	9	49	1.72
1690326--1690361	17	2.2	16	90	5	54	38	0	16	44	1.48
1690352--1690384	12	3.0	11	91	8	50	36	0	9	54	1.32
1692912--1692945	2	17.0	2	100	0	68	0	50	0	50	1.00
1715307--1715337	6	5.2	6	100	0	62	0	16	48	35	1.46
1716472--1716513	13	3.3	13	76	6	50	54	9	2	33	1.46
1731897--1732021	62	2.0	62	92	3	207	36	28	9	25	1.88
1740174--1740205	15	2.1	16	94	5	57	6	25	18	50	1.70
1740956--1740987	16	2.0	16	93	0	55	34	25	6	34	1.81
1744062--1744179	31	3.9	30	76	3	83	25	17	7	49	1.73
1747021--1747114	14	7.3	14	73	18	87	7	10	26	55	1.60
1747022--1747077	24	2.3	24	87	0	85	7	8	26	57	1.55
1747021--1747115	38	2.5	38	94	0	163	7	10	26	55	1.60
1747066--1747125	24	2.5	24	88	0	93	8	10	23	58	1.57
1747479--1747552	10	7.6	10	72	22	68	10	10	20	58	1.62
1747484--1747548	16	4.1	16	91	0	112	9	12	21	56	1.63
1755377--1755466	30	3.0	30	91	6	155	35	23	18	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1755466--1755530	31	2.1	30	83	8	78	33	15	20	30	1.93
1756753--1756810	20	2.6	22	81	10	66	25	24	22	27	2.00
1756798--1756935	64	2.2	63	83	5	170	24	23	18	33	1.97
1760046--1760135	30	3.0	30	96	0	162	35	23	16	24	1.95
1760131--1760199	31	2.2	31	84	5	86	34	17	18	28	1.94
1761422--1761478	20	2.6	22	89	8	82	26	24	22	26	2.00
1761466--1761606	64	2.2	63	82	5	167	24	24	17	33	1.96
1767300--1767333	17	2.0	17	100	0	68	11	23	47	17	1.81
1767349--1767406	19	3.0	19	87	7	82	27	31	25	15	1.96
1767347--1767411	9	6.9	9	77	10	67	29	30	26	13	1.94
1774116--1774160	22	2.0	22	95	0	81	8	22	48	20	1.76
1774168--1774213	19	2.4	19	85	0	56	26	26	26	21	2.00
1774197--1774262	10	6.8	9	72	16	51	28	24	27	19	1.99
1774189--1774261	20	3.7	22	76	18	63	27	24	28	19	1.98
1784353--1784407	20	2.8	20	94	0	92	25	29	7	38	1.83
1794967--1795036	32	2.2	33	84	7	90	30	1	1	67	1.08
1797057--1797081	3	8.3	3	100	0	50	36	32	32	0	1.58
1800656--1800718	21	2.9	22	75	11	58	52	3	4	39	1.38
1800901--1801017	51	2.3	50	84	8	155	28	29	19	22	1.98
1807349--1807464	41	3.0	39	85	8	157	44	20	3	31	1.68
1809974--1810016	23	1.9	22	90	4	68	23	0	4	72	1.04
1811765--1811821	23	2.5	23	97	0	105	26	14	22	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1812214--1812262	2	25.0	2	95	4	91	51	0	0	48	1.00
1818322--1818383	23	2.7	23	94	0	115	32	11	22	33	1.90
1818802--1818853	23	2.3	22	90	6	77	44	19	1	34	1.62
1818812--1818874	23	2.7	23	90	0	90	39	19	4	36	1.72
1819293--1819377	39	2.2	39	91	2	134	16	15	22	45	1.84
1819650--1819688	12	3.2	12	92	0	60	53	12	5	28	1.60
1819650--1819688	6	6.5	6	81	0	51	53	12	5	28	1.60
1820075--1820124	25	2.0	25	92	0	82	44	20	8	28	1.79
1820397--1820448	23	2.3	22	90	6	77	44	19	1	34	1.62
1820407--1820469	23	2.7	23	90	0	90	39	19	4	36	1.72
1820754--1820819	25	2.6	25	78	0	78	40	13	10	34	1.79
1823273--1823765	183	2.7	182	95	1	871	33	17	14	34	1.91
1824156--1824218	23	2.7	23	87	0	90	36	20	4	38	1.74
1825797--1825840	9	4.6	9	78	15	52	25	34	2	38	1.68
1825796--1825876	6	13.5	6	79	5	74	24	33	6	35	1.81
1825800--1825891	18	5.1	18	77	0	76	21	33	7	36	1.82
1825819--1825888	36	1.9	36	94	0	122	21	34	10	34	1.87
1825834--1825888	24	2.3	24	83	0	74	20	34	10	34	1.87
1825800--1825891	6	15.3	6	79	0	67	21	33	7	36	1.82
1827355--1828309	198	4.9	199	95	2	1690	31	17	14	37	1.89
1828427--1828475	19	2.6	19	93	0	80	57	10	2	30	1.43
1829997--1830040	24	1.9	22	86	9	61	0	43	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1830315--1830356	21	2.0	21	90	0	66	16	30	11	40	1.85
1832365--1832417	24	2.2	24	83	6	63	26	7	13	52	1.66
1832557--1832599	20	2.3	18	85	14	61	20	16	11	51	1.75
1832562--1832608	20	2.4	19	82	10	67	19	17	10	53	1.72
1832802--1832840	21	1.9	20	89	5	60	23	17	15	43	1.87
1833424--1833448	11	2.3	11	100	0	50	36	24	8	32	1.84
1833553--1833650	48	2.0	48	100	0	196	20	24	21	33	1.97
1838863--1838913	6	8.5	6	87	12	70	0	17	47	35	1.48
1839006--1839127	21	5.8	21	74	13	117	37	20	20	21	1.94
1838999--1839136	42	3.3	42	90	2	226	36	21	20	22	1.95

Tables:   1   2   3   4   5   6   7   8   9   10