genome.fa.s9067.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009067.1 Hibiscus syriacus cultivar Beakdansim tig00112491_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2329927

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  3  of  10  ( 1150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
570375--570626	42	5.9	43	76	6	233	26	23	17	32	1.96
570375--570626	85	2.9	85	82	5	301	26	23	17	32	1.96
572407--572455	18	2.7	18	90	0	71	20	24	30	24	1.98
578198--578226	2	15.0	2	92	7	51	48	0	0	51	1.00
588544--588574	16	1.9	16	93	0	53	48	25	12	12	1.77
591094--591160	21	3.2	21	87	4	82	25	2	20	50	1.62
591085--591160	14	5.4	14	68	6	55	25	2	23	48	1.64
591122--591179	21	2.8	21	86	0	80	31	1	18	48	1.59
591086--591176	28	3.2	28	76	0	83	27	2	23	47	1.63
591281--591348	11	6.3	11	73	14	61	41	1	1	55	1.18
594219--594274	13	4.3	12	78	17	51	41	0	0	58	0.98
594687--594755	34	2.0	35	91	2	113	44	24	8	21	1.80
602827--603028	100	2.0	99	90	2	316	34	16	23	26	1.95
615048--615143	48	2.0	48	96	4	178	51	4	2	42	1.33
615065--615159	27	3.9	27	69	24	75	46	5	3	45	1.41
615071--615159	25	3.7	25	70	20	73	47	5	3	43	1.43
615290--615337	7	6.9	7	76	9	53	16	0	35	47	1.47
615290--615359	21	3.4	21	78	7	65	18	0	34	47	1.49
616750--616805	23	2.4	23	96	0	103	32	16	23	28	1.96
616800--617035	23	10.3	23	95	1	411	22	12	21	43	1.86
618124--618539	207	2.0	209	98	0	809	30	24	18	26	1.98
619984--620082	31	3.2	31	88	0	144	37	18	16	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
620251--620429	93	1.9	93	89	0	277	36	21	16	25	1.94
620251--620434	31	5.9	31	86	0	251	36	21	16	25	1.94
621598--621641	2	23.5	2	86	13	67	52	0	0	47	1.00
624100--624207	35	3.2	35	87	8	161	31	4	20	43	1.72
624499--624537	16	2.4	16	91	4	60	33	7	23	35	1.83
624499--624532	16	2.1	17	94	5	61	35	5	23	35	1.79
628550--628668	35	3.3	37	88	8	174	31	5	20	43	1.73
637240--637275	19	1.9	19	88	5	56	52	8	2	36	1.46
637573--637613	20	2.0	20	85	9	55	39	12	7	41	1.70
638108--638136	14	2.0	15	93	6	51	13	13	13	58	1.63
638479--638518	21	2.0	21	95	5	73	27	32	30	10	1.89
643232--643273	22	1.9	22	85	9	59	40	9	7	42	1.65
644151--644190	21	1.9	21	100	0	80	25	35	30	10	1.88
647978--648038	19	3.2	19	75	11	61	22	31	29	16	1.96
649990--650027	18	2.1	18	85	9	51	21	0	23	55	1.44
656870--657047	51	3.5	51	89	3	268	26	24	17	31	1.97
657042--657446	54	7.5	54	93	0	684	18	25	19	36	1.94
657823--657946	37	3.4	37	85	2	151	25	18	21	33	1.96
662513--662651	72	1.9	72	94	0	242	24	27	12	35	1.92
663713--663832	46	2.7	45	84	5	136	35	23	12	28	1.91
676793--677021	89	2.6	89	94	0	386	36	27	5	30	1.80
680319--680419	34	3.0	34	85	0	139	36	4	5	52	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
680940--680991	21	2.5	21	82	17	72	23	26	32	17	1.96
682756--682826	28	2.4	27	79	11	70	60	1	0	38	1.06
682781--682859	32	2.4	33	83	8	90	58	0	0	41	0.98
683063--683207	59	2.4	60	81	6	170	23	28	27	20	1.99
686783--687108	2	170.0	2	63	21	67	47	2	5	44	1.40
686814--686873	18	3.2	20	82	15	76	46	5	1	46	1.34
686897--687068	85	2.0	83	90	4	265	47	2	6	44	1.41
687317--687390	37	2.1	36	84	5	96	39	9	10	40	1.73
687597--687687	20	4.5	19	73	20	69	42	6	6	43	1.56
687608--687655	18	2.8	18	84	12	66	43	6	8	41	1.60
687613--687655	17	2.4	18	88	3	61	44	6	6	41	1.58
687624--687688	24	2.9	22	82	11	71	41	7	6	44	1.58
687569--687687	59	2.0	59	83	6	150	41	6	7	44	1.59
687734--687808	21	3.5	21	78	7	71	41	6	4	48	1.48
687797--688060	15	16.5	15	65	23	71	43	4	2	48	1.38
687920--687980	31	2.0	31	93	6	106	40	4	1	52	1.33
687762--688032	131	2.1	133	78	9	288	43	5	2	48	1.40
687961--688048	34	2.7	32	79	11	90	48	2	0	48	1.13
687994--688063	15	4.9	14	83	13	72	50	1	0	48	1.09
687997--688059	6	10.3	6	78	21	53	49	1	0	49	1.10
687997--688057	21	2.9	22	81	16	67	49	1	0	49	1.10
687870--688089	65	3.3	67	75	17	158	46	3	1	48	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
690438--690482	19	2.4	19	100	0	90	20	15	26	37	1.92
691014--691075	23	2.7	23	94	0	106	25	9	29	35	1.88
691637--691674	13	2.8	13	82	17	51	60	0	2	36	1.11
691653--691770	19	6.5	19	67	22	67	58	1	5	34	1.30
691703--691741	14	2.7	14	88	11	53	56	5	2	35	1.35
691638--691781	71	2.0	70	88	9	213	57	2	4	36	1.30
691905--691935	16	1.9	16	93	0	53	29	9	16	45	1.79
693059--693118	29	2.1	29	84	6	77	33	23	8	35	1.85
693368--693408	18	2.3	18	91	4	66	29	4	2	63	1.28
695086--695120	18	1.9	18	94	0	61	25	28	20	25	1.99
700525--700600	30	2.7	28	76	11	75	48	2	5	43	1.39
712343--712445	23	4.4	23	78	7	91	29	14	12	43	1.82
712348--712445	47	2.1	46	84	5	126	30	15	12	41	1.83
716595--716896	166	1.8	166	97	0	577	30	20	21	27	1.98
720435--720549	35	3.3	35	92	3	187	45	20	5	28	1.73
724964--725033	36	2.0	34	86	5	95	45	15	5	32	1.70
735227--735357	65	2.0	64	89	7	201	33	13	6	45	1.70
735718--735766	23	2.1	23	92	0	80	30	0	12	57	1.36
735718--735774	23	2.4	23	85	2	69	31	1	10	56	1.44
743143--743176	17	1.9	18	88	5	52	79	5	0	14	0.91
743420--743517	16	5.9	17	73	16	73	69	3	3	24	1.17
756522--756574	26	2.0	26	82	7	63	58	1	3	35	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
757272--757358	32	2.7	32	78	0	102	43	14	10	31	1.79
758206--758320	21	5.6	21	68	4	99	21	20	24	33	1.97
758186--758384	41	4.9	41	93	1	328	17	21	24	36	1.94
758394--758464	19	3.6	19	72	10	70	21	18	21	39	1.93
758312--758466	41	3.8	41	90	3	199	16	20	23	38	1.93
758186--758450	82	3.2	80	87	5	311	18	21	23	36	1.94
758186--758425	123	2.0	122	84	6	315	18	21	23	36	1.95
758543--758585	6	7.5	6	97	2	72	30	53	16	0	1.43
759078--759122	6	7.5	6	100	0	90	0	15	51	33	1.44
759206--759271	19	3.3	19	72	12	69	40	21	19	18	1.91
759221--759292	22	3.4	22	73	11	87	37	25	19	18	1.94
759199--759292	41	2.3	41	98	0	179	39	23	18	19	1.92
767290--767314	2	12.5	2	100	0	50	0	48	0	52	1.00
772878--772922	12	3.6	12	77	11	54	28	0	22	48	1.50
772873--772928	26	2.2	26	100	0	112	26	0	26	46	1.53
779804--779873	36	1.9	36	94	0	122	30	31	12	25	1.93
781326--781354	15	1.9	15	100	0	58	34	13	3	48	1.60
784809--784858	24	2.1	24	100	0	100	54	8	0	38	1.30
785950--785996	15	3.0	15	87	9	67	61	2	0	36	1.08
785957--786000	9	4.8	9	81	13	54	63	2	0	34	1.07
785950--786000	17	3.2	16	91	5	77	62	1	0	35	1.06
787258--787323	29	2.3	29	100	0	132	21	33	16	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
787370--787394	12	2.1	12	100	0	50	24	24	0	52	1.48
789748--789778	2	15.5	2	100	0	62	51	0	0	48	1.00
794646--794706	21	3.2	21	65	29	64	42	21	4	31	1.74
794613--794712	35	2.8	35	96	1	182	45	19	6	30	1.74
799204--799317	35	3.2	36	87	4	162	44	17	5	32	1.71
801282--801411	60	2.2	59	87	2	181	42	10	9	37	1.72
801302--801438	59	2.3	59	81	8	161	43	9	10	36	1.71
801458--801613	73	2.1	73	98	0	303	35	7	11	44	1.69
804445--804492	23	2.0	23	84	4	60	58	4	0	37	1.18
809523--809600	36	2.2	35	82	13	88	47	7	2	42	1.46

Tables:   1   2   3   4   5   6   7   8   9   10