genome.fa.s9071.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009071.1 Hibiscus syriacus cultivar Beakdansim tig00112501_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  822590

Tables:   1   2   3   4   

This is table  1  of  4  ( 459 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1091--1233	25	5.7	25	98	0	259	32	15	18	33	1.92
1363--1423	3	21.0	3	83	12	83	67	0	1	31	1.01
2955--2987	14	2.3	15	89	5	50	60	9	0	30	1.27
6939--6977	15	2.7	15	88	7	55	33	17	7	41	1.79
8301--8357	28	2.1	27	83	3	69	7	28	0	64	1.19
15272--15319	23	2.1	23	88	0	69	39	12	14	33	1.84
15524--15590	30	2.2	29	82	10	73	43	0	4	52	1.21
15744--15806	23	2.7	23	92	0	99	38	20	4	36	1.74
16227--16291	34	1.9	34	93	3	114	16	16	18	47	1.83
16231--16301	34	2.2	33	87	5	99	16	16	19	46	1.84
16564--16600	18	2.1	18	89	0	56	51	10	5	32	1.60
17039--17101	23	2.7	23	92	0	99	38	20	4	36	1.74
17117--17166	22	2.3	22	77	16	59	38	10	12	40	1.76
17440--17504	24	2.7	24	78	2	76	43	13	9	33	1.76
19971--20644	183	3.7	183	96	0	1181	34	17	14	33	1.90
22113--22193	3	27.0	3	75	0	72	23	34	6	35	1.80
22117--22205	12	7.4	12	84	0	88	21	34	7	35	1.82
22117--22208	18	5.1	18	77	0	76	20	34	7	36	1.81
22129--22205	36	2.1	36	90	0	118	20	35	9	35	1.85
22117--22208	6	15.3	6	79	0	67	20	34	7	36	1.81
23670--24834	199	5.8	199	96	1	2100	31	15	15	37	1.89
23670--24834	397	2.9	398	96	1	2100	31	15	15	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24943--24991	19	2.6	19	93	0	80	57	10	2	30	1.43
26783--26848	33	2.0	33	90	0	105	22	48	0	28	1.51
26882--26946	21	3.1	21	79	0	76	16	30	13	38	1.88
27029--27061	15	2.2	15	94	0	57	9	63	9	18	1.49
29168--29210	20	2.3	18	85	14	61	20	16	11	51	1.75
29173--29219	20	2.4	19	82	10	67	19	17	10	53	1.72
29354--29400	20	2.3	20	89	10	78	17	17	10	55	1.69
29140--29612	181	2.6	181	90	1	707	26	17	14	42	1.87
29679--30165	229	2.1	228	95	0	875	39	7	8	44	1.63
31001--31038	14	2.5	15	87	8	51	39	2	0	57	1.12
31627--31658	14	2.3	14	94	0	55	59	3	6	31	1.38
32129--32205	37	2.1	37	85	4	102	48	1	3	46	1.28
32345--32381	20	1.9	19	89	10	58	24	21	5	48	1.71
37036--37136	30	3.4	30	89	5	143	18	16	30	33	1.94
37036--37148	30	3.8	29	88	6	120	19	16	30	33	1.94
37095--37147	15	3.5	15	72	7	54	15	16	30	37	1.90
38507--38554	24	2.0	23	88	4	69	31	8	10	50	1.66
39758--39919	31	5.2	30	84	3	198	34	20	17	27	1.95
39758--39919	32	5.2	31	81	8	195	34	20	17	27	1.95
40012--40044	16	2.0	17	88	5	50	33	15	6	45	1.70
41297--41331	14	2.3	16	85	14	56	60	0	34	5	1.21
47832--47875	21	2.1	21	91	0	70	36	4	29	29	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48074--48223	75	2.0	77	82	11	184	34	5	10	50	1.60
48280--48325	20	2.3	20	85	3	58	28	2	6	63	1.31
48390--48417	12	2.3	12	100	0	56	7	50	17	25	1.72
50518--50571	17	3.5	15	78	16	65	40	1	0	57	1.09
53904--53970	34	1.9	34	82	14	84	22	14	16	46	1.84
54436--54494	30	2.0	30	93	3	102	37	6	11	44	1.68
54673--54746	20	3.7	20	92	3	114	22	33	16	27	1.95
54857--54896	20	1.9	22	90	10	66	37	40	10	12	1.77
63955--63990	2	18.0	2	100	0	72	50	0	0	50	1.00
66895--66971	16	5.0	14	72	22	57	66	2	2	28	1.18
66882--66947	3	22.7	3	73	17	59	69	1	3	25	1.11
66885--66954	25	2.6	28	84	13	85	70	1	2	25	1.10
67039--67104	32	2.1	31	91	5	107	54	7	0	37	1.29
67077--67306	36	6.2	36	81	6	212	43	5	3	47	1.44
67665--67706	22	1.9	22	85	0	57	35	4	4	54	1.42
68776--68834	25	2.4	25	100	0	118	35	11	6	45	1.67
69283--69315	2	16.5	2	100	0	66	48	0	0	51	1.00
71851--71877	3	9.0	3	100	0	54	66	0	0	33	0.92
72647--72674	2	14.0	2	100	0	56	0	50	0	50	1.00
78756--78848	42	2.2	42	92	0	150	17	18	18	46	1.85
79066--79124	22	2.8	22	87	5	77	44	0	0	55	0.99
79305--79349	23	2.0	23	86	0	63	53	2	2	42	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79637--79681	14	3.1	14	78	6	54	35	17	6	40	1.76
85271--85302	6	4.9	7	92	7	50	28	0	0	71	0.86
88525--88597	33	2.2	33	85	2	103	30	47	12	9	1.73
88887--88944	26	2.3	26	84	3	82	50	8	34	6	1.60
88943--88989	14	3.5	13	77	11	51	57	0	40	2	1.11
89090--89130	22	1.9	21	85	5	55	26	0	19	53	1.45
89432--89478	16	3.0	16	84	9	53	29	0	10	59	1.31
89453--89483	15	2.1	14	94	5	53	38	0	6	54	1.26
91613--91674	14	4.6	14	76	11	58	46	12	0	40	1.42
91651--91912	21	12.6	21	62	24	83	47	10	0	41	1.38
91646--91760	48	2.3	49	92	2	187	47	11	0	40	1.39
91744--91948	21	10.2	21	64	20	71	45	11	0	42	1.40
91695--91948	60	4.2	60	95	0	456	46	11	0	42	1.40
92022--92070	14	3.7	14	73	15	50	46	12	2	38	1.53
92036--92152	48	2.5	48	90	4	175	47	9	0	41	1.41
92090--92283	60	3.2	60	97	0	354	45	12	0	41	1.41
92253--92300	24	2.0	24	88	12	71	35	14	0	50	1.44
91692--92941	335	3.7	335	94	2	2114	44	11	2	41	1.54
92357--92404	14	3.6	14	81	16	66	47	16	0	35	1.47
92376--92487	48	2.3	49	92	3	181	48	10	0	41	1.38
92425--92618	60	3.2	60	97	0	363	46	12	0	41	1.41
92474--92618	21	7.2	21	65	20	67	46	12	0	41	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92680--92785	24	4.6	22	73	20	83	51	10	0	37	1.36
92681--92728	14	3.7	14	70	30	52	54	12	0	33	1.38
92701--92813	48	2.3	48	92	3	181	47	10	0	41	1.38
92748--92937	60	3.2	60	95	0	337	45	13	0	41	1.43
92797--92937	21	7.0	21	64	20	68	45	14	0	40	1.45
95983--96052	20	3.5	20	69	18	63	22	22	21	32	1.98
95924--96218	41	7.1	41	91	0	455	22	20	24	32	1.98
96046--96155	21	5.3	21	65	20	70	20	20	27	31	1.97
96189--96248	21	3.0	21	90	4	70	26	23	15	35	1.94
97745--97805	23	2.7	23	89	0	95	26	27	26	19	1.99
97821--98141	103	3.1	103	97	0	615	36	23	13	27	1.91
100252--100290	20	1.9	20	89	5	60	58	5	10	25	1.51
102957--103017	23	2.7	23	80	10	79	27	27	24	19	1.99
109265--109325	23	2.7	23	80	5	72	22	37	21	18	1.94
111568--111600	11	3.0	11	95	0	57	18	0	30	51	1.46
112747--112951	103	2.0	103	97	0	383	36	23	13	27	1.92
115349--115418	20	3.5	20	70	18	72	34	22	22	20	1.97
115305--115435	41	3.2	41	94	1	226	31	25	21	22	1.98
116259--116320	28	2.1	30	94	5	110	56	12	0	30	1.37
116829--116911	29	2.9	29	88	0	112	14	25	39	20	1.90
116865--116971	32	3.4	32	87	8	134	11	16	45	26	1.81
117654--117699	23	2.0	23	82	0	56	41	4	2	52	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118001--118047	14	3.3	14	77	14	51	57	2	2	38	1.23
123565--123715	75	2.0	75	100	0	302	46	7	12	33	1.71
123782--123839	29	2.0	29	86	3	80	55	8	5	31	1.52
133986--134176	93	2.1	93	90	0	301	34	26	14	24	1.94
140126--140150	2	12.5	2	100	0	50	48	0	0	52	1.00
143924--143961	2	19.0	2	100	0	76	50	0	0	50	1.00
146439--146464	2	13.0	2	100	0	52	50	0	0	50	1.00
155142--155182	22	1.9	22	85	5	57	41	7	7	43	1.60
155258--155298	2	21.0	2	85	5	57	51	4	0	43	1.23
163427--163460	13	2.6	13	100	0	68	61	8	8	20	1.52

Tables:   1   2   3   4