genome.fa.s9071.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009071.1 Hibiscus syriacus cultivar Beakdansim tig00112501_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  822590

Tables:   1   2   3   4   

This is table  2  of  4  ( 459 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
163406--163490	23	3.5	23	75	10	89	60	14	9	16	1.59
163407--163490	13	6.8	13	75	15	54	60	13	9	16	1.58
163453--163498	23	2.0	23	87	8	67	60	19	8	10	1.55
169206--169254	21	2.3	22	76	13	50	79	0	2	18	0.83
169939--169979	19	2.1	19	86	9	55	7	31	19	41	1.79
170638--170912	37	7.2	38	75	17	177	45	7	4	42	1.52
170674--170923	78	3.3	77	86	6	300	45	8	4	42	1.53
170911--170935	12	2.1	12	100	0	50	44	8	8	40	1.63
171062--171094	2	16.5	2	93	0	57	51	0	3	45	1.16
175185--175227	2	21.5	2	90	0	68	48	0	0	51	1.00
179853--179990	60	2.3	60	85	7	174	35	6	24	33	1.81
179880--180035	60	2.6	60	76	13	151	37	7	25	29	1.83
186161--186203	2	21.5	2	100	0	86	51	0	48	0	1.00
201246--201302	11	5.1	11	82	8	62	66	0	0	33	0.92
201246--201296	11	4.5	11	87	7	66	66	0	0	33	0.92
201246--201323	22	3.5	24	77	10	76	62	0	0	37	0.95
201291--201320	12	2.4	13	88	11	53	53	0	0	46	1.00
202770--202831	31	2.0	31	83	0	79	37	9	25	27	1.87
204627--204688	31	2.0	31	96	0	115	33	16	27	22	1.95
205281--205322	16	2.6	16	85	7	50	59	0	2	38	1.10
205275--205315	16	2.7	16	79	20	52	58	0	2	39	1.11
211696--211752	22	2.6	22	97	0	105	38	14	15	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
212907--213127	36	5.9	35	79	11	192	48	3	7	40	1.49
212907--213225	38	8.6	36	76	14	226	46	3	7	42	1.49
212885--213086	111	1.8	110	88	1	305	46	2	8	42	1.49
212908--213225	111	2.9	110	81	11	316	46	3	7	42	1.49
213264--213305	10	4.3	10	84	6	50	26	9	0	64	1.24
216355--216399	19	2.4	19	92	3	74	11	13	8	66	1.44
219759--220464	165	4.2	165	85	3	844	29	24	20	24	1.99
219759--220483	84	8.7	83	82	4	806	29	24	20	24	1.99
219759--220483	248	2.9	248	82	5	883	29	24	20	24	1.99
221101--221281	38	4.8	37	78	8	179	47	3	8	40	1.52
221073--221280	37	5.6	40	76	13	146	46	3	8	42	1.50
221101--221456	37	9.6	38	73	18	163	45	3	7	42	1.50
221458--221498	3	14.3	3	82	10	50	31	0	4	63	1.15
226183--226223	20	2.0	20	85	0	55	34	26	7	31	1.84
228737--228797	31	2.0	31	83	3	79	31	19	9	39	1.84
229248--229318	31	2.3	31	80	9	83	22	18	15	43	1.87
230549--230609	30	2.0	30	90	0	95	39	3	14	42	1.62
246442--246485	20	2.4	18	80	20	56	50	4	18	27	1.66
246630--246702	36	2.0	36	84	10	96	47	4	1	46	1.30
250558--250593	5	7.2	5	90	0	54	83	13	0	2	0.76
250558--250634	15	5.1	15	73	9	57	79	10	0	10	0.95
250600--250638	16	2.5	15	83	4	51	79	0	0	20	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
251715--251758	20	2.2	20	84	8	54	47	0	6	45	1.29
253258--253331	22	3.4	22	100	0	148	27	32	27	13	1.94
254896--254940	21	2.1	21	87	0	63	31	28	24	15	1.96
255567--255720	31	5.0	31	93	1	256	22	20	20	37	1.95
258684--258728	21	2.1	21	87	0	63	31	28	24	15	1.96
259355--259508	31	5.0	31	93	1	256	22	20	20	37	1.95
261157--261287	35	3.7	35	85	2	181	23	22	20	33	1.97
267451--267504	14	3.8	14	85	2	63	51	9	14	24	1.71
269068--269117	16	2.8	18	82	17	68	76	0	2	22	0.89
269069--269117	19	2.5	20	87	9	66	75	0	2	22	0.90
269540--269569	7	4.3	7	100	0	60	70	0	0	30	0.88
269916--269996	15	4.9	15	71	19	63	67	2	2	27	1.15
271972--272065	29	3.2	29	64	21	70	34	11	15	38	1.84
277745--277773	14	2.0	15	93	6	51	41	20	0	37	1.53
278024--278066	18	2.4	17	81	11	50	62	4	0	32	1.15
284554--284890	177	1.9	174	93	4	588	43	3	8	45	1.51
286713--286743	16	1.9	16	100	0	62	51	3	6	38	1.44
290104--290227	60	2.1	60	100	0	248	29	22	19	28	1.98
292759--292821	27	2.3	27	83	2	72	33	1	3	61	1.21
296867--296904	2	19.0	2	100	0	76	50	0	0	50	1.00
301819--301852	16	2.1	16	94	0	59	32	8	26	32	1.87
302602--302634	15	2.1	16	88	5	50	51	15	24	9	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
308471--308575	31	3.4	30	70	12	88	38	6	16	39	1.75
316143--316234	31	3.1	30	69	17	82	39	10	15	34	1.82
316135--316247	60	1.9	60	86	0	163	34	12	15	37	1.86
317673--317712	18	2.3	18	86	4	55	55	0	0	45	0.99
317730--317762	14	2.2	16	89	10	52	72	0	0	27	0.85
318078--318116	20	2.0	20	85	10	53	51	5	0	43	1.24
329753--329791	19	2.1	19	95	0	69	61	2	10	25	1.41
331044--331119	20	3.8	20	91	1	107	32	28	18	19	1.96
334597--334716	60	2.0	60	84	9	156	35	12	15	35	1.86
339413--339513	31	3.4	29	76	13	100	36	16	14	31	1.90
339613--339665	2	26.5	2	100	0	106	50	0	0	49	1.00
359604--359670	21	3.2	21	93	0	116	28	10	26	34	1.90
359687--359729	22	2.0	22	85	0	59	23	25	25	25	2.00
364848--364914	21	3.2	21	95	0	125	29	10	25	34	1.89
364931--364973	22	2.0	22	85	0	59	23	25	25	25	2.00
365166--365213	21	2.3	21	78	7	53	47	2	18	31	1.60
370074--370182	21	5.2	21	96	0	191	30	10	25	33	1.89
375805--375841	19	1.9	19	94	0	65	35	27	16	21	1.94
375805--375853	19	2.5	19	86	3	62	36	26	16	20	1.93
375892--375932	21	2.0	21	85	0	55	24	19	19	36	1.95
375948--376038	20	4.5	20	81	8	112	29	29	17	23	1.97
377100--377135	14	2.5	14	90	4	54	52	22	16	8	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379264--379546	140	2.0	140	95	0	512	28	12	14	44	1.81
379517--379573	20	2.8	20	94	0	96	31	21	21	26	1.98
381189--381290	21	4.9	21	74	4	89	25	20	32	21	1.98
381169--381290	42	2.9	42	78	7	131	24	18	34	22	1.96
381767--381810	20	2.2	20	95	0	79	50	22	13	13	1.77
381797--381864	20	3.4	20	91	0	109	35	26	20	17	1.95
381961--382028	20	3.4	20	81	0	82	19	17	25	38	1.93
384107--384157	21	2.4	21	96	0	93	43	13	13	29	1.83
384390--384454	22	3.0	22	80	4	71	20	15	44	20	1.86
384622--384724	20	5.1	20	80	6	118	29	20	24	26	1.99
386676--386718	22	2.0	22	85	0	59	41	20	9	27	1.83
386993--387035	6	7.2	6	94	0	59	27	48	16	6	1.71
387033--387076	5	8.8	5	92	0	70	20	36	40	2	1.65
392939--392981	6	7.2	6	94	0	77	32	48	16	2	1.58
392979--393027	5	9.8	5	93	0	71	22	34	40	2	1.66
394978--395019	21	2.0	21	100	0	84	42	19	9	28	1.82
411010--411044	13	2.8	13	91	4	54	57	0	0	42	0.99
414040--414080	8	5.2	8	82	5	57	34	0	29	36	1.58
414148--414752	126	4.8	126	98	0	1156	22	25	19	32	1.97
415139--415236	31	3.0	34	80	8	130	38	3	4	54	1.35
415755--415848	21	4.5	21	92	5	129	20	26	35	18	1.95
415852--415899	21	2.3	21	85	0	60	22	12	39	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
417622--417689	29	2.3	30	85	5	95	60	1	0	38	1.06
422462--422514	5	9.8	5	76	15	52	7	22	50	18	1.72
422455--422515	17	3.3	17	79	20	77	11	22	47	18	1.80
422435--422465	7	4.4	7	91	0	53	29	29	25	16	1.96
422448--422514	22	3.0	22	93	4	107	11	23	46	17	1.82
422513--422598	19	4.5	19	81	9	86	27	30	25	16	1.97
422511--422598	9	9.3	9	76	7	77	27	29	27	15	1.96
422513--422589	38	2.0	39	82	7	95	27	29	25	16	1.97
428052--428109	30	1.9	30	92	0	98	22	20	15	41	1.90
429254--429291	16	2.5	15	84	12	51	28	5	0	65	1.14

Tables:   1   2   3   4