genome.fa.s9071.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009071.1 Hibiscus syriacus cultivar Beakdansim tig00112501_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  822590

Tables:   1   2   3   4   

This is table  4  of  4  ( 459 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
611246--611323	30	2.6	30	91	2	122	41	6	17	34	1.76
611310--611359	20	2.5	20	90	0	82	40	12	14	34	1.82
611526--611590	28	2.3	28	86	7	87	52	0	1	46	1.10
611525--611707	29	6.3	29	70	19	109	51	0	1	46	1.12
611556--611615	24	2.7	23	82	7	61	56	1	0	41	1.09
611525--611630	29	3.6	29	80	11	117	53	0	0	44	1.13
611643--611686	22	2.0	23	86	4	63	54	0	0	45	0.99
611647--611703	21	2.6	22	81	10	64	52	0	0	47	1.00
611583--611703	54	2.3	51	77	19	133	50	0	0	47	1.12
611892--612011	42	2.9	42	98	0	231	44	19	20	15	1.87
619393--619444	25	2.1	26	82	13	65	50	3	0	46	1.20
640867--640990	38	3.4	37	83	9	148	16	8	32	42	1.79
649473--649515	16	2.7	15	79	10	50	44	6	0	48	1.29
651849--651928	38	2.1	38	86	2	117	26	0	15	58	1.37
651868--651927	19	3.2	19	67	9	59	30	0	10	60	1.30
652635--652734	45	2.2	45	89	1	148	26	11	11	52	1.70
653568--653602	14	2.5	14	85	0	52	22	22	20	34	1.97
653567--653610	21	2.2	20	83	4	52	22	25	18	34	1.96
657369--657427	20	2.8	21	79	10	66	20	25	33	20	1.97
657368--657418	23	2.3	23	83	6	70	21	21	39	17	1.93
662866--662927	21	3.1	21	70	13	67	16	27	35	20	1.94
663660--663844	64	2.9	64	80	6	198	33	21	20	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
664192--664227	12	3.0	12	87	0	54	30	8	25	36	1.85
664243--664309	29	2.3	29	97	0	125	43	14	22	19	1.87
670582--670807	64	3.5	64	81	4	217	30	20	21	27	1.98
671115--671150	12	3.0	12	87	0	54	30	8	25	36	1.85
671166--671239	29	2.6	29	95	2	132	43	14	21	20	1.88
671324--671356	15	2.2	15	94	0	57	15	21	33	30	1.94
672657--672724	23	3.0	23	86	0	91	20	26	26	26	1.99
678338--678405	24	2.7	25	72	14	68	33	2	0	63	1.10
684407--684478	31	2.3	31	95	0	126	40	11	19	29	1.86
694497--694558	19	3.3	19	73	15	65	45	0	4	50	1.23
696696--697192	238	2.0	241	89	5	761	23	10	27	38	1.88
701408--701458	25	2.1	24	88	3	75	60	9	0	29	1.28
705537--705845	45	6.9	45	88	2	451	32	21	7	39	1.80
705537--705845	135	2.3	135	91	1	503	32	21	7	39	1.80
705875--705924	14	3.6	14	97	2	93	36	12	30	22	1.90
705929--706012	40	2.1	40	84	0	105	28	22	22	26	1.99
710290--710335	24	1.9	24	82	8	58	28	26	0	45	1.54
712576--712611	2	18.5	2	94	5	65	50	0	0	50	1.00
714877--714926	25	2.0	25	100	0	100	36	4	24	36	1.74
727112--727141	3	10.3	3	92	7	53	0	30	0	70	0.88
728850--728875	5	5.2	5	100	0	52	57	0	0	42	0.98
730209--730299	24	3.8	24	97	0	173	23	9	13	53	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
730278--730328	14	3.6	14	87	7	77	13	9	17	58	1.61
730504--730600	47	2.1	47	86	3	133	10	12	18	58	1.61
730525--730627	47	2.2	47	83	0	125	13	13	14	58	1.64
732118--732155	16	2.3	17	86	13	53	34	5	0	60	1.19
732147--732194	24	2.0	24	83	4	60	47	0	2	50	1.12
732444--732494	25	2.0	25	78	17	61	56	1	0	41	1.10
745205--745258	27	2.0	27	100	0	108	37	0	40	22	1.54
746554--746595	19	2.2	19	86	0	57	23	9	7	59	1.53
747849--747964	54	2.1	54	87	6	164	30	26	21	21	1.98
751444--751522	35	2.3	35	84	6	99	48	3	3	44	1.39
761411--761451	15	2.6	16	81	18	50	41	9	9	39	1.71
763128--763173	19	2.4	19	92	3	74	19	28	30	21	1.98
763182--763223	12	3.4	12	80	6	57	16	40	23	19	1.91
763247--763447	29	7.0	28	80	8	188	35	4	14	44	1.68
763244--763447	58	3.5	58	86	3	268	35	4	14	45	1.67
763248--763440	87	2.2	86	80	3	235	36	5	15	43	1.69
764386--764582	84	2.4	84	91	1	308	21	20	22	35	1.96
765224--765298	39	1.9	39	88	0	114	30	20	26	22	1.98
765230--765306	39	2.0	39	84	5	102	29	22	25	22	1.99
766150--766176	13	2.1	13	100	0	54	14	18	44	22	1.86
770790--770834	13	3.5	12	82	14	54	15	4	0	80	0.87
770790--770834	6	7.0	6	82	12	54	15	4	0	80	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
770820--770871	22	2.4	22	84	12	63	21	11	0	67	1.22
770866--770925	24	2.4	25	78	13	61	28	6	0	65	1.18
775194--775349	43	3.4	43	67	14	125	33	25	19	21	1.97
774559--776046	106	14.3	105	87	3	1971	33	25	18	23	1.97
774559--776046	412	3.6	413	88	3	2038	33	25	18	23	1.97
778262--778313	22	2.4	22	84	12	63	21	11	0	67	1.22
778313--778370	22	2.6	22	74	17	57	25	6	0	67	1.16
778232--778378	6	22.7	6	70	18	55	21	7	0	70	1.11
782976--783023	21	2.1	24	81	11	57	16	52	2	29	1.56
788611--788697	21	4.1	21	96	0	165	47	24	13	14	1.81
789276--789329	20	2.7	19	77	2	54	20	12	14	51	1.75
790878--790924	21	2.2	21	80	0	58	19	17	31	31	1.94
791182--791249	20	3.4	19	90	8	100	38	26	17	17	1.92
791242--791317	33	2.3	34	84	6	93	47	19	17	15	1.83
791284--791321	20	1.9	20	94	0	67	52	18	15	13	1.74
791322--791382	19	3.1	19	78	4	68	13	18	21	47	1.82
791865--791987	42	2.9	42	80	4	149	21	34	18	25	1.96
792915--792978	23	2.8	23	82	0	83	28	25	26	20	1.99
792989--793211	103	2.2	103	99	0	437	36	25	13	24	1.91
793963--794187	64	3.5	64	83	7	253	27	19	20	32	1.96
798661--798724	23	2.8	23	90	0	101	26	26	28	18	1.98
798735--798957	103	2.2	103	99	0	437	37	24	13	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
799709--799933	64	3.5	64	83	7	253	28	19	19	32	1.96
802114--802179	20	3.3	20	91	4	98	45	28	13	12	1.80
802114--802191	20	3.9	21	88	6	83	46	25	15	12	1.81
802249--802345	20	4.8	20	88	0	140	29	19	20	29	1.97
804586--804622	14	2.6	14	91	4	56	5	21	21	51	1.68
805519--805556	17	2.2	17	95	0	67	28	5	34	31	1.80
805703--805750	20	2.4	20	89	0	78	25	16	29	29	1.97
805742--805794	20	2.6	21	82	11	65	16	15	20	47	1.83
805787--805827	21	2.0	21	85	0	55	36	19	19	24	1.95
811364--811505	75	1.9	76	84	8	193	52	7	9	30	1.61
819835--819874	21	1.9	21	84	0	53	57	15	10	17	1.64

Tables:   1   2   3   4

The End!