genome.fa.s9071.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009071.1 Hibiscus syriacus cultivar Beakdansim tig00112501_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  822590

Tables:   1   2   3   4   

This is table  3  of  4  ( 459 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
430277--430308	14	2.3	14	100	0	64	81	0	18	0	0.70
431410--431730	159	2.0	159	98	0	615	32	13	24	29	1.93
432509--432544	18	2.0	18	94	0	63	55	22	2	19	1.56
432748--432789	20	2.1	20	86	0	57	47	19	11	21	1.81
432780--432840	29	2.1	29	87	0	86	34	22	13	29	1.92
434082--434115	16	2.2	15	89	5	50	23	5	0	70	1.09
436222--436312	26	3.7	26	87	8	129	29	18	29	21	1.97
436163--436312	21	6.6	22	74	15	110	26	19	32	21	1.97
436222--436316	47	1.9	50	87	10	142	30	17	29	22	1.97
436908--436935	14	2.0	14	100	0	56	21	21	28	28	1.99
438983--439074	20	4.6	20	72	10	80	22	10	22	43	1.84
441797--441846	21	2.4	21	80	6	57	72	2	6	20	1.16
450041--450075	11	3.1	11	95	4	61	74	0	0	25	0.82
451808--452016	29	7.4	29	88	7	297	35	0	15	48	1.49
451810--452016	56	3.7	56	89	5	301	35	0	15	48	1.49
451808--452016	84	2.5	84	90	1	310	35	0	15	48	1.49
453030--453082	25	2.1	25	82	0	61	28	5	16	49	1.69
457715--457842	28	4.6	28	82	5	143	32	2	14	50	1.55
457715--457823	27	4.0	27	85	5	139	33	0	13	51	1.48
458872--458924	25	2.1	25	85	0	70	28	1	16	52	1.54
459485--459521	19	2.1	18	90	10	58	32	0	5	62	1.18
459488--459530	23	1.9	22	85	4	59	32	0	2	65	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
460418--460443	13	2.0	13	100	0	52	30	7	30	30	1.85
461200--461231	15	2.1	15	100	0	64	25	31	12	31	1.92
464343--464378	16	2.2	16	100	0	72	22	19	25	33	1.97
465335--465364	12	2.5	12	94	0	51	6	60	6	26	1.47
466131--466168	20	1.9	20	88	0	58	63	0	0	36	0.95
470788--470853	32	2.1	32	97	0	123	19	16	24	39	1.92
474357--474496	73	1.9	74	94	1	246	37	19	10	32	1.86
481603--481637	6	5.8	6	100	0	70	0	48	0	51	1.00
485206--485346	22	6.4	22	88	0	210	41	0	9	48	1.35
485201--485329	66	1.9	67	96	1	242	43	0	8	47	1.39
485370--485429	31	1.9	31	93	0	102	45	6	6	41	1.57
487286--487310	2	12.5	2	100	0	50	52	0	0	48	1.00
491033--491083	18	2.8	18	70	21	52	29	15	11	43	1.82
498216--498511	147	2.0	147	88	1	441	30	14	9	45	1.76
501145--501196	14	3.3	15	76	13	52	53	0	0	46	1.00
501142--501193	25	2.1	24	82	10	61	55	0	0	44	0.99
502310--502340	6	5.2	6	100	0	62	16	0	83	0	0.64
521046--521073	3	9.3	3	100	0	56	35	0	0	64	0.94
537511--537550	20	2.0	20	95	0	71	45	12	5	37	1.64
537564--537603	20	2.0	21	90	5	64	45	12	5	37	1.64
537617--537655	20	2.0	20	94	0	69	41	17	5	35	1.72
537504--537656	53	2.9	51	95	2	270	48	12	5	33	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
542226--542265	20	2.0	20	95	0	71	45	12	5	37	1.64
542279--542318	20	2.0	21	90	5	64	45	15	5	35	1.68
542332--542370	20	2.0	20	89	0	60	43	15	5	35	1.69
542222--542371	53	2.9	52	95	3	266	48	12	6	32	1.65
543418--543448	13	2.4	13	100	0	62	16	48	16	19	1.81
543469--543499	7	4.3	7	92	8	53	12	35	25	25	1.92
543466--543500	15	2.3	15	100	0	70	14	37	25	22	1.92
543466--543520	7	6.6	9	84	16	50	18	34	23	23	1.96
544796--544831	18	2.0	18	88	0	54	52	0	16	30	1.44
548160--548208	13	3.8	13	88	0	71	18	44	18	18	1.87
548211--548241	7	4.3	7	92	8	53	12	35	25	25	1.92
548208--548242	15	2.3	15	100	0	70	14	37	25	22	1.92
548208--548262	7	6.6	9	84	16	50	18	34	23	23	1.96
549538--549573	18	2.0	18	88	0	54	52	0	16	30	1.44
563601--563639	16	2.4	16	91	0	60	46	17	12	23	1.83
565192--565284	21	4.5	21	75	4	91	40	18	23	17	1.90
565192--565284	41	2.3	41	98	0	177	40	18	23	17	1.90
565273--565366	20	4.7	20	80	2	89	34	24	18	23	1.96
565270--565347	41	1.9	41	86	0	111	39	21	16	21	1.92
565882--565948	19	3.5	19	85	2	89	47	25	16	10	1.78
565944--566089	19	8.1	19	71	17	105	12	22	21	43	1.86
565979--566064	33	2.6	33	92	1	136	11	24	25	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
566032--566089	20	2.9	20	80	10	64	13	24	18	43	1.87
568088--568209	42	2.9	42	80	2	120	22	36	18	22	1.95
568143--568209	21	3.2	21	66	6	55	23	35	20	19	1.95
569568--569603	14	2.6	14	95	0	63	30	0	25	44	1.54
569782--569898	19	6.7	19	73	18	119	12	23	17	45	1.84
569807--569898	33	2.8	33	96	0	166	13	23	17	45	1.83
569782--569880	52	2.0	50	82	13	123	12	24	18	45	1.83
572191--572215	12	2.1	12	100	0	50	0	28	0	72	0.86
572390--572443	24	2.2	24	86	0	72	38	18	16	25	1.92
573503--573576	39	1.9	38	91	2	121	35	25	22	16	1.95
573503--573576	19	3.8	19	92	3	121	35	25	22	16	1.95
573597--573664	19	3.8	19	83	12	83	16	22	16	45	1.85
575682--575748	19	3.5	19	83	4	89	37	23	23	14	1.93
575737--575794	14	3.9	14	75	16	62	48	24	17	10	1.78
575721--575799	32	2.4	33	93	2	133	46	22	18	11	1.81
575806--575922	19	6.6	19	71	19	92	13	21	20	44	1.86
575828--575886	14	3.9	14	76	20	64	10	16	23	49	1.77
575811--575902	33	2.8	33	96	0	166	11	18	20	48	1.79
576414--576458	18	2.5	18	88	0	72	13	15	44	26	1.83
577778--577816	20	2.0	20	89	0	60	51	20	15	12	1.76
578079--578122	22	2.0	22	95	0	79	18	15	45	20	1.85
578310--578403	20	4.7	20	80	2	89	23	18	24	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
578290--578404	20	5.7	20	78	5	88	23	17	23	35	1.95
578393--578468	21	3.7	21	80	3	100	15	25	18	40	1.90
578332--578466	41	3.3	41	82	4	139	19	21	20	38	1.94
578412--578478	20	3.3	20	79	4	89	16	23	17	41	1.89
578393--578481	41	2.2	41	100	0	178	16	24	16	41	1.89
583723--583775	21	2.5	21	87	0	79	20	24	18	35	1.95
583784--583837	20	2.7	20	91	0	81	33	25	18	22	1.97
584324--584409	20	4.3	20	84	8	95	34	24	19	20	1.96
584324--584409	40	2.2	40	85	4	111	34	24	19	20	1.96
584414--584532	19	6.7	19	76	19	132	45	18	23	12	1.84
584433--584528	33	2.9	33	98	1	183	44	18	23	12	1.84
584452--584506	14	3.6	14	73	21	56	45	20	23	10	1.82
584691--584727	14	2.6	14	86	0	56	48	21	0	29	1.50
586366--586461	41	2.3	40	77	10	95	54	2	1	42	1.19
586368--586754	180	2.1	187	92	3	655	42	3	8	44	1.52
587471--587554	20	4.2	20	92	0	141	38	23	20	17	1.93
587577--587732	34	4.4	34	71	13	136	17	19	19	42	1.89
587599--587755	20	8.5	20	74	18	126	19	18	20	42	1.90
589459--589514	21	2.7	21	80	5	60	30	16	1	51	1.54
589476--589519	21	2.1	21	83	8	54	34	18	0	47	1.49
589731--590182	149	3.0	149	95	0	789	36	21	15	26	1.93
591196--591352	64	2.5	62	81	10	165	28	17	20	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
592782--592851	20	3.5	20	86	1	97	51	22	14	11	1.74
593001--593057	21	2.7	21	94	2	96	52	10	12	24	1.70
593217--593284	22	3.1	22	86	0	91	20	19	41	19	1.91
593501--593547	21	2.2	20	85	10	67	36	17	25	21	1.94
594213--594263	24	2.2	23	82	10	59	45	17	13	23	1.84
594258--594322	30	2.1	31	88	5	96	61	13	7	16	1.54
594262--594338	30	2.6	29	83	8	84	58	16	9	15	1.62
595517--595828	132	2.3	133	80	7	328	31	14	11	41	1.82
596194--596236	2	21.5	2	90	9	70	51	0	2	46	1.13
611246--611311	15	4.4	15	86	0	96	39	6	16	37	1.74

Tables:   1   2   3   4