genome.fa.s9081.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009081.1 Hibiscus syriacus cultivar Beakdansim tig00112523_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1718667

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 838 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
223794--223877	40	2.1	40	100	0	168	13	25	16	45	1.83
223676--223969	92	3.3	90	84	12	344	13	21	18	46	1.83
223657--223941	52	5.2	54	83	13	299	14	21	16	47	1.83
223876--223969	34	2.8	33	88	6	136	12	20	20	46	1.82
227160--227524	20	18.5	20	84	6	431	20	19	26	34	1.96
238965--238995	13	2.4	13	94	0	53	19	41	22	16	1.89
243428--243466	18	2.2	18	100	0	78	17	51	20	10	1.74
247893--247931	18	2.2	18	90	0	60	20	48	17	12	1.80
250243--250350	24	4.5	25	76	11	86	17	15	17	49	1.81
250257--250349	12	7.8	12	75	9	73	17	15	18	49	1.80
250260--250351	48	1.9	48	86	4	132	17	15	17	50	1.79
250509--250535	2	13.5	2	100	0	54	48	0	0	51	1.00
258253--258433	99	1.8	99	88	4	276	29	21	21	27	1.99
258855--258893	2	19.5	2	100	0	78	48	0	0	51	1.00
259924--259963	14	2.9	14	96	0	71	52	5	2	40	1.37
265749--265778	3	10.0	3	100	0	60	33	0	66	0	0.92
265763--265804	22	2.0	22	85	4	59	50	0	42	7	1.30
267371--267395	12	2.1	12	100	0	50	52	0	0	48	1.00
267338--267388	20	2.5	20	77	3	57	52	1	5	39	1.37
267640--267681	22	1.9	22	90	0	66	45	2	0	52	1.13
267710--267760	21	2.3	22	83	12	61	43	7	1	47	1.43
267797--267835	2	19.5	2	100	0	78	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
268324--268374	22	2.3	22	80	10	59	56	1	3	37	1.29
271093--271134	2	21.0	2	100	0	84	50	0	0	50	1.00
271196--271220	13	1.9	13	100	0	50	52	8	0	40	1.31
271256--271311	2	28.0	2	100	0	112	50	0	0	50	1.00
273064--273114	20	2.5	20	93	0	84	54	1	1	41	1.22
274320--274347	14	2.0	14	100	0	56	21	42	28	7	1.79
274315--274377	20	2.9	22	76	19	69	25	36	28	9	1.87
274481--274520	14	2.9	14	96	0	71	7	27	40	25	1.82
290187--290213	4	6.8	4	100	0	54	51	0	0	48	1.00
290836--290921	29	3.0	29	82	0	100	19	38	29	12	1.89
294494--294605	35	3.2	35	84	0	143	41	20	0	36	1.59
294601--294675	35	2.1	35	82	4	89	34	0	21	44	1.53
297446--297475	15	1.9	16	93	6	53	60	0	0	40	0.97
297485--297541	29	1.9	30	82	10	73	56	8	3	31	1.47
297751--297790	18	2.2	18	95	0	71	45	15	7	32	1.74
297897--297974	31	2.5	31	93	0	138	24	8	33	33	1.87
298831--298864	17	2.0	17	100	0	68	64	5	5	23	1.38
302349--302405	29	2.0	29	86	6	80	43	12	12	31	1.79
302265--302527	129	2.0	131	91	3	431	38	14	15	32	1.87
302494--302588	29	3.2	29	68	11	75	36	15	13	33	1.87
303757--303786	10	3.0	10	95	0	51	50	23	20	6	1.71
304888--304927	18	2.2	18	90	0	62	20	47	15	17	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321267--321307	17	2.4	17	95	0	73	36	24	21	17	1.94
327311--327341	3	10.3	3	100	0	62	0	32	0	67	0.91
333611--333722	58	1.9	58	85	0	152	33	13	12	41	1.82
337149--337190	21	1.9	23	85	9	61	64	2	9	23	1.35
337873--337981	29	3.7	30	79	7	116	42	10	11	35	1.76
338371--338431	21	2.9	21	72	16	54	54	1	3	40	1.27
338357--338455	17	5.5	18	69	16	62	52	1	2	44	1.19
340521--340644	31	4.0	31	77	5	133	34	18	16	29	1.94
340519--340642	62	2.0	62	86	10	173	33	19	16	29	1.94
342927--342960	17	1.9	17	88	5	50	50	0	5	44	1.26
343429--343453	13	1.9	13	100	0	50	44	0	16	40	1.47
344337--344366	15	2.0	15	93	0	51	63	6	0	30	1.20
357663--358054	195	2.0	195	100	0	784	27	17	20	34	1.95
359779--359831	28	1.9	28	85	11	74	62	0	1	35	1.06
362097--362251	76	2.0	77	98	1	303	38	14	10	36	1.81
366207--366294	43	2.0	43	100	0	176	25	30	19	25	1.98
369578--369610	16	2.0	17	94	5	59	36	21	6	36	1.78
371659--371704	21	2.1	22	88	4	67	30	15	4	50	1.63
372150--372179	2	15.0	2	100	0	60	50	0	0	50	1.00
374216--374584	20	18.5	20	84	5	442	34	26	18	20	1.96
375267--375313	24	2.0	24	87	8	69	25	14	21	38	1.92
375487--375511	12	2.1	12	100	0	50	72	0	28	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
377787--378040	19	14.4	19	80	17	316	47	18	20	14	1.83
377815--378040	52	4.2	52	91	6	364	47	17	20	14	1.82
377872--378062	33	5.5	33	90	6	256	46	17	20	15	1.84
377815--378078	52	5.0	53	83	10	230	46	17	20	15	1.84
378069--378170	19	5.6	19	82	12	142	15	23	16	44	1.86
378275--378311	14	2.6	14	91	0	65	45	21	0	32	1.52
378376--378411	12	3.0	12	83	0	54	63	16	0	19	1.30
380265--380321	14	3.7	14	77	20	60	45	22	21	10	1.82
380246--380338	33	2.8	33	95	0	168	47	21	20	10	1.80
380209--380343	19	7.6	19	76	16	128	45	23	19	11	1.82
380339--380467	19	7.3	18	73	20	112	8	17	27	46	1.77
380339--380430	33	2.8	33	93	3	150	7	18	28	45	1.76
380598--380969	93	4.0	93	97	1	712	46	18	12	22	1.83
380598--380969	185	2.0	185	98	0	726	46	18	12	22	1.83
382674--382763	14	5.7	14	72	23	72	43	23	24	8	1.82
382667--382780	33	3.5	33	92	1	194	45	21	23	9	1.81
382688--382785	19	5.7	19	71	22	81	43	22	23	10	1.83
382797--382851	14	3.6	14	73	21	56	9	25	23	41	1.83
382781--382851	33	2.2	33	94	0	124	8	22	25	43	1.81
382792--382873	33	2.5	33	89	2	119	9	25	21	42	1.84
382804--382892	20	4.8	20	72	19	75	12	24	19	43	1.85
382975--383043	32	2.2	32	91	0	111	46	20	21	11	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
382994--383043	16	3.0	18	69	22	54	44	22	22	12	1.85
383220--383274	22	2.5	22	81	0	74	20	16	40	23	1.91
383420--383612	20	9.6	20	82	5	219	19	19	25	35	1.95
383420--383612	60	3.2	60	83	0	251	19	19	25	35	1.95
383668--383719	20	2.6	20	96	0	95	21	13	26	38	1.90
385497--385630	60	2.2	60	82	5	164	34	14	14	37	1.86
389229--389258	2	15.0	2	100	0	60	50	0	0	50	1.00
395238--395277	19	2.1	19	100	0	80	52	5	10	32	1.56
395671--395740	31	2.3	31	87	0	95	32	11	12	42	1.79
398304--398335	16	2.0	16	93	0	55	46	25	15	12	1.81
400957--401025	34	2.0	34	100	0	138	28	10	14	46	1.77
408014--408048	4	8.2	4	87	12	52	25	2	0	71	1.00
408008--408044	18	2.1	18	100	0	74	27	5	0	67	1.12
408014--408048	14	2.8	12	84	16	52	25	2	0	71	1.00
409042--409090	24	2.0	26	88	8	75	40	0	6	53	1.26
409243--409304	28	2.3	27	86	5	88	40	3	9	46	1.53
409263--409352	31	3.1	28	79	17	94	45	3	4	46	1.39
409274--409353	29	2.6	31	84	9	112	48	3	3	43	1.38
425116--425161	23	2.0	24	86	4	67	43	4	15	36	1.66
425387--425424	2	19.0	2	100	0	76	50	0	0	50	1.00
426943--427006	28	2.3	28	97	0	119	26	18	6	48	1.72
427579--427630	15	3.5	15	84	2	61	25	19	28	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
429826--429874	21	2.3	21	100	0	98	22	32	22	22	1.98
435692--435726	2	17.5	2	100	0	70	48	0	0	51	1.00
435913--435945	17	1.9	17	88	11	50	15	0	6	78	0.93
438842--438886	19	2.3	19	84	3	54	44	2	0	53	1.13
448599--448658	20	3.0	20	76	13	70	28	21	11	38	1.89
449548--449608	30	2.0	30	100	0	122	16	16	26	40	1.89
449613--449655	18	2.4	18	92	0	68	20	48	20	9	1.77
452158--452269	24	4.7	24	85	6	138	25	16	20	38	1.92
452230--452279	24	2.1	24	88	0	73	22	16	20	42	1.89
452387--452481	43	2.2	43	92	3	165	16	10	36	35	1.84

Tables:   1   2   3   4   5   6   7