genome.fa.s9081.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009081.1 Hibiscus syriacus cultivar Beakdansim tig00112523_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1718667

Tables:   1   2   3   4   5   6   7   

This is table  6  of  7  ( 838 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1162804--1162901	41	2.4	41	84	3	117	23	21	19	35	1.96
1174090--1174114	13	1.9	13	100	0	50	24	20	0	56	1.43
1174405--1174547	67	2.1	68	84	3	182	33	16	4	45	1.68
1176919--1176981	2	31.5	2	100	0	126	49	0	0	50	1.00
1177272--1177298	14	1.9	14	100	0	54	37	3	0	59	1.15
1183187--1183230	22	2.0	22	100	0	88	45	13	18	22	1.84
1185137--1185218	31	2.6	31	78	0	92	52	7	1	39	1.37
1185137--1185233	31	3.1	31	77	2	79	49	7	2	41	1.42
1186008--1186038	2	15.5	2	100	0	62	48	0	0	51	1.00
1189004--1189038	12	2.9	12	95	0	61	51	11	14	22	1.74
1189159--1189210	15	3.5	15	94	0	86	5	15	69	9	1.35
1200168--1200266	42	2.4	42	89	0	153	29	36	16	18	1.92
1200385--1200430	21	2.2	21	88	7	67	21	13	32	32	1.92
1200447--1200497	21	2.4	21	81	12	61	19	13	33	33	1.91
1200612--1200657	4	11.5	4	80	0	56	30	2	0	67	1.03
1200802--1200899	21	4.7	21	91	5	153	21	37	18	22	1.94
1202724--1202759	18	2.0	18	94	0	63	16	2	25	55	1.55
1205037--1205088	24	2.2	24	82	0	59	38	19	17	25	1.93
1205812--1205849	16	2.5	15	84	12	51	65	0	5	28	1.14
1206007--1206074	20	3.4	20	73	15	68	35	13	22	29	1.92
1206019--1206115	40	2.4	39	84	6	124	38	12	20	28	1.89
1206078--1206122	20	2.2	20	84	7	56	48	8	20	22	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1207964--1208298	135	2.5	135	87	2	465	37	23	21	16	1.93
1208348--1208775	189	2.2	189	83	2	525	40	19	21	18	1.92
1208772--1209079	165	1.9	161	87	6	458	44	19	21	14	1.86
1209114--1209431	129	2.5	129	86	0	429	39	22	24	13	1.89
1209678--1209708	6	5.2	6	96	0	53	19	16	35	29	1.93
1214461--1214485	12	2.1	12	100	0	50	44	0	16	40	1.47
1215701--1215770	21	3.2	21	70	7	59	21	20	21	37	1.95
1215794--1216034	120	2.0	120	88	1	360	36	19	18	26	1.94
1230215--1230251	12	3.1	12	88	11	58	8	0	8	83	0.80
1244071--1244183	57	2.0	57	84	8	149	42	14	12	30	1.82
1244322--1244355	17	1.9	18	88	5	52	61	2	2	32	1.26
1245640--1245745	29	3.6	29	81	5	122	42	6	9	41	1.63
1245835--1245910	28	2.7	28	89	0	116	38	9	9	43	1.69
1248447--1248473	12	2.2	12	100	0	54	22	29	18	29	1.97
1252029--1252067	3	13.3	3	94	5	71	69	0	30	0	0.89
1254641--1254778	60	2.3	60	79	7	154	37	12	15	34	1.85
1259202--1259260	29	2.0	29	93	0	100	23	10	13	52	1.71
1263881--1263939	29	2.0	29	100	0	118	23	13	13	49	1.78
1267777--1267821	23	2.0	23	86	0	63	26	26	26	20	1.99
1267936--1268004	25	2.8	25	97	0	129	27	26	27	18	1.98
1269394--1269438	21	2.1	21	83	0	54	13	24	31	31	1.93
1272860--1272928	25	2.8	25	100	0	138	27	26	28	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1274338--1274382	21	2.1	21	83	0	54	13	24	31	31	1.93
1282239--1282934	3	231.7	3	77	5	593	0	43	0	56	1.01
1310542--1310567	13	2.0	13	100	0	52	30	23	15	30	1.95
1310605--1310649	19	2.3	20	80	7	56	64	2	2	31	1.18
1316738--1316804	33	2.0	33	97	0	125	35	8	13	41	1.76
1319249--1319388	58	2.4	58	82	8	169	36	15	14	33	1.88
1326051--1326118	30	2.3	29	80	10	75	36	8	10	44	1.70
1328277--1328687	185	2.2	184	79	5	431	46	9	10	32	1.71
1330413--1330451	19	2.0	19	90	5	60	33	5	10	51	1.58
1341821--1341941	64	1.9	63	89	1	188	37	22	16	23	1.94
1341829--1341982	63	2.4	64	82	3	168	37	23	15	23	1.93
1342626--1342677	25	2.1	24	82	7	59	46	3	7	42	1.51
1343543--1343601	23	2.6	23	83	0	73	18	27	27	27	1.98
1348127--1348178	20	2.8	18	75	11	50	57	0	1	40	1.10
1347933--1348296	187	2.0	185	92	2	604	42	3	8	45	1.52
1355249--1355336	27	3.4	26	82	9	108	38	22	25	13	1.91
1355249--1355320	24	2.9	24	85	6	90	38	20	26	13	1.90
1357403--1357490	32	2.8	32	82	3	97	20	26	29	23	1.99
1357446--1357521	31	2.4	32	84	2	91	25	23	27	23	2.00
1361232--1361307	39	1.9	39	83	0	98	28	23	25	22	1.99
1365641--1365709	23	3.0	23	81	10	79	30	24	24	20	1.99
1371096--1371141	20	2.3	20	100	0	92	26	15	15	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1379419--1379448	13	2.4	13	94	5	53	26	30	0	43	1.55
1384752--1384790	20	2.1	19	85	9	53	48	2	0	48	1.15
1393843--1393886	17	2.6	16	79	10	52	31	0	4	63	1.14
1394626--1394665	15	2.5	17	80	15	50	35	5	10	50	1.58
1394901--1394941	18	2.3	18	87	4	57	29	7	2	60	1.36
1396594--1396661	23	2.9	23	80	2	64	23	14	17	44	1.86
1396606--1396690	23	3.7	23	79	3	98	24	12	20	42	1.87
1398575--1398648	30	2.5	30	100	0	148	47	4	0	48	1.20
1401720--1401760	21	2.0	20	85	4	55	17	12	48	21	1.79
1402510--1402577	30	2.3	30	94	0	118	36	25	4	33	1.76
1405895--1405962	20	3.3	20	81	4	91	30	25	26	17	1.97
1405983--1406082	22	4.7	21	74	14	80	24	19	34	23	1.97
1407621--1407668	18	2.7	18	96	0	87	27	22	8	41	1.82
1408847--1408916	34	2.1	34	86	5	99	24	28	14	32	1.94
1409317--1409416	43	2.4	42	83	8	123	23	19	35	23	1.96
1409317--1409416	22	4.7	21	76	14	98	23	19	35	23	1.96
1409496--1409553	30	2.0	29	90	10	91	44	17	5	32	1.70
1409496--1409555	29	2.0	30	93	6	104	43	16	6	33	1.74
1411853--1412056	108	1.9	108	89	2	320	23	23	23	29	1.99
1415971--1416034	21	3.0	21	79	0	74	28	25	18	28	1.98
1417447--1417529	36	2.3	36	95	0	148	33	20	16	28	1.95
1419383--1419710	66	5.0	66	82	3	349	32	18	24	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1419561--1419601	21	2.0	21	85	9	57	24	21	24	29	1.99
1419395--1419710	129	2.4	132	81	6	347	32	18	24	24	1.97
1420472--1420518	21	2.2	21	96	0	85	36	19	12	31	1.89
1425061--1425100	21	1.9	21	94	0	71	32	0	22	45	1.53
1425386--1425424	3	13.0	3	94	0	69	30	0	0	69	0.89
1427481--1427541	29	2.1	30	82	14	74	29	1	34	34	1.68
1429477--1429525	2	24.5	2	95	0	89	51	0	0	48	1.00
1432842--1432946	31	3.4	30	78	5	84	40	8	10	40	1.70
1436455--1436492	17	2.2	17	90	0	58	31	13	2	52	1.54
1437875--1438419	6	91.8	6	96	3	1016	33	0	17	49	1.46
1438481--1438523	20	2.2	20	83	8	52	30	11	20	37	1.89
1445220--1445383	6	27.3	6	96	0	274	34	3	15	46	1.62
1446971--1446998	13	2.2	13	100	0	56	35	7	7	50	1.57
1449752--1449817	30	2.2	31	86	5	91	34	31	6	27	1.81
1457855--1457879	11	2.3	11	100	0	50	32	0	8	60	1.26
1460199--1460265	31	2.2	31	97	0	125	22	25	13	38	1.90
1461139--1461253	54	2.2	52	85	4	149	48	9	13	28	1.73
1462892--1463049	21	7.8	20	71	7	77	39	25	16	18	1.91
1463014--1463068	20	2.8	19	80	5	65	45	27	16	10	1.80
1463055--1463208	20	7.7	20	86	2	220	32	25	20	20	1.97
1463016--1463209	40	4.9	39	82	2	199	36	25	19	18	1.95
1463016--1463208	60	3.2	59	80	2	215	35	25	19	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1463591--1463661	33	2.2	33	92	0	115	11	22	18	47	1.80
1463739--1463850	21	5.8	20	75	17	112	46	17	24	11	1.81
1463801--1463857	14	3.7	14	75	20	60	43	22	24	8	1.81
1463737--1463873	33	3.8	33	81	16	148	45	20	23	10	1.81
1463869--1463966	19	5.7	19	71	22	99	10	23	21	44	1.82
1463891--1463980	14	5.7	14	70	23	63	10	24	21	44	1.82
1463874--1463988	33	3.5	33	98	0	221	10	23	19	46	1.80
1465685--1466338	93	7.1	93	99	0	1285	21	12	19	46	1.83
1466386--1466514	19	7.3	19	75	17	125	45	28	16	9	1.78
1466422--1466514	33	2.8	32	91	4	150	46	27	17	8	1.77

Tables:   1   2   3   4   5   6   7