genome.fa.s913.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000913.1 Hibiscus syriacus cultivar Beakdansim tig00001818_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1610646

Tables:   1   2   3   4   5   6   7   

This is table  1  of  7  ( 813 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4629--4687	22	2.7	21	82	7	73	27	27	15	30	1.96
4673--4715	20	2.2	20	83	8	52	18	27	27	25	1.98
7146--7185	19	2.0	20	85	4	55	40	0	7	52	1.30
8806--8836	16	1.9	16	100	0	62	0	32	0	67	0.91
11925--11974	15	3.4	14	86	8	64	58	14	20	8	1.61
11940--11978	14	2.7	15	84	8	53	64	10	20	5	1.44
17760--17918	83	1.9	83	80	5	185	30	17	18	32	1.95
26683--26713	15	2.1	15	93	0	53	54	0	0	45	0.99
26724--26783	28	2.1	28	81	6	68	43	1	3	51	1.28
32115--32172	21	2.8	20	80	12	64	48	5	1	44	1.35
32250--32293	21	2.0	22	82	4	54	36	4	9	50	1.55
36882--37098	64	3.4	64	78	7	174	33	19	19	27	1.96
36926--37102	64	2.8	63	77	8	178	33	20	20	25	1.97
38260--38384	31	4.0	31	78	9	128	29	18	19	32	1.95
38371--38441	30	2.4	30	95	0	124	23	19	23	32	1.98
40844--40919	31	2.5	31	84	0	98	30	17	21	31	1.96
45642--45666	12	2.1	12	100	0	50	28	48	8	16	1.74
46916--46949	5	6.6	5	89	3	50	55	5	0	38	1.24
54101--54152	21	2.5	21	87	3	70	38	17	25	19	1.93
54141--54295	20	7.7	20	84	6	170	32	24	18	23	1.97
54138--54295	81	1.9	82	85	3	221	34	24	18	23	1.96
54161--54295	61	2.2	61	86	0	198	33	24	18	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54463--54506	22	2.0	22	95	0	79	20	45	15	18	1.85
54714--54756	19	2.3	19	100	0	86	20	23	20	34	1.96
54769--54837	20	3.5	20	93	0	111	20	18	26	34	1.96
54769--54847	20	4.0	20	91	0	95	18	18	22	39	1.93
54984--55038	25	2.2	24	78	15	58	20	9	18	52	1.71
56165--56209	18	2.5	18	88	0	72	26	44	15	13	1.83
56700--56744	20	2.3	20	88	3	74	37	17	22	22	1.94
56708--56824	19	6.6	19	72	19	92	42	19	21	16	1.89
56744--56800	14	3.7	14	75	20	60	50	22	15	10	1.74
56728--56812	33	2.6	33	100	0	170	48	20	18	12	1.81
56836--56893	14	3.9	14	79	16	71	10	17	24	48	1.78
56820--56942	33	3.8	33	86	2	167	13	17	21	47	1.81
56820--56942	65	1.9	66	87	1	185	13	17	21	47	1.81
56917--56983	20	3.4	20	81	6	66	16	22	20	40	1.91
57348--57435	41	2.1	41	85	2	122	21	43	14	20	1.88
58847--58885	14	2.8	14	84	0	51	35	0	17	46	1.49
59022--59089	19	3.8	19	85	14	101	47	17	22	13	1.82
59116--59203	20	4.4	20	75	5	97	17	20	22	39	1.92
59741--59774	12	2.9	12	86	4	52	17	41	5	35	1.74
60329--60382	24	2.2	24	90	0	81	22	14	18	44	1.86
60557--60593	12	3.1	12	92	0	65	70	2	27	0	1.01
62884--63000	19	6.7	19	70	18	101	46	18	23	11	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62884--63000	52	2.2	52	93	3	200	46	18	23	11	1.82
63011--63067	14	3.7	14	75	20	60	8	24	22	43	1.81
62996--63085	33	2.7	33	94	0	153	13	22	21	43	1.87
63025--63085	19	3.5	19	72	21	69	11	22	21	44	1.84
63192--63228	14	2.6	14	91	0	65	45	24	0	29	1.53
64586--64652	21	3.2	21	68	4	55	19	20	35	23	1.95
64586--64708	42	2.9	41	79	7	113	22	18	36	21	1.95
64963--64995	17	1.9	17	88	11	50	45	12	18	24	1.83
64926--65110	91	2.0	90	89	6	282	47	17	12	22	1.81
66817--66904	33	2.6	33	96	1	158	39	21	26	12	1.89
66819--66957	19	8.2	17	66	25	80	41	20	25	12	1.87
66854--66970	52	2.2	52	92	0	198	42	20	23	12	1.87
66922--66948	14	1.9	14	100	0	54	40	22	29	7	1.81
66966--67031	19	3.5	19	79	4	71	10	16	24	48	1.78
67593--67648	20	2.7	21	83	5	87	42	14	23	19	1.88
67710--67762	21	2.5	22	81	6	74	33	18	26	20	1.96
68727--69412	105	6.6	105	93	1	1071	22	22	19	36	1.95
68727--69412	209	3.3	209	91	2	1078	22	22	19	36	1.95
70313--70438	19	6.7	18	76	16	89	11	11	0	77	0.99
70326--70423	8	12.0	8	78	16	78	13	9	0	77	0.99
70313--70419	41	2.7	41	80	13	116	11	9	0	79	0.94
70313--70438	36	3.3	38	75	15	111	11	11	0	77	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73945--73971	14	1.9	14	100	0	54	66	3	22	7	1.33
85819--85926	42	2.6	42	88	7	141	32	19	21	26	1.97
85908--86285	90	4.2	90	88	1	535	34	20	17	27	1.95
86287--86406	42	2.9	42	84	2	143	33	20	20	25	1.97
86324--86391	22	3.2	21	64	17	50	33	23	17	25	1.96
86445--86829	43	9.0	43	89	3	573	27	31	14	26	1.95
86745--86812	21	3.2	21	61	19	50	30	32	13	23	1.93
88367--88558	52	3.7	52	88	2	280	20	23	18	36	1.94
89735--89799	17	3.7	17	84	10	78	4	15	0	80	0.88
89717--89800	43	2.0	43	86	9	118	7	15	0	77	0.97
89734--89809	18	4.3	18	77	3	73	3	18	0	77	0.92
99652--99737	32	2.7	31	78	10	93	29	19	16	34	1.94
103683--103909	34	6.7	34	67	20	113	48	5	5	40	1.50
108582--109275	94	7.4	94	98	0	1329	25	19	30	24	1.98
108582--109275	187	3.7	188	98	0	1329	25	19	30	24	1.98
108582--109275	281	2.5	281	98	0	1343	25	19	30	24	1.98
109275--109304	2	15.0	2	100	0	60	50	0	0	50	1.00
109390--109463	27	2.7	28	76	17	75	37	1	1	59	1.14
109425--109476	24	2.2	23	86	13	70	32	0	0	67	0.91
117249--117299	23	2.3	21	81	12	66	43	1	0	54	1.11
120232--120274	3	14.3	3	100	0	86	65	0	0	34	0.93
121868--121949	28	2.9	29	90	3	139	31	4	26	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121870--121968	28	3.5	28	85	9	130	31	5	26	37	1.78
126365--126399	10	3.5	10	100	0	70	80	0	0	20	0.72
131160--131292	66	2.0	66	100	0	266	28	25	15	30	1.95
132826--132941	58	2.0	58	100	0	232	15	18	31	34	1.93
134510--134547	20	1.9	20	88	0	58	10	26	36	26	1.89
152327--152387	15	4.5	14	73	24	51	73	0	16	9	1.08
152324--152386	32	2.0	32	87	6	92	74	0	17	7	1.05
152342--152376	17	2.0	17	88	5	52	77	0	20	2	0.90
152324--152406	32	2.6	32	79	11	89	72	0	16	10	1.12
152343--152405	10	6.1	10	78	14	58	76	0	14	9	1.02
152327--152387	7	9.0	7	78	20	51	73	0	16	9	1.08
152342--152485	26	5.8	24	70	20	84	71	0	20	7	1.10
153817--154130	55	5.7	55	85	4	359	25	17	26	30	1.97
153817--154117	165	1.8	165	85	7	432	25	17	25	32	1.97
153817--154152	165	2.0	165	81	8	400	25	17	25	31	1.97
156839--156877	20	1.9	21	89	5	62	41	0	0	58	0.98
157570--157652	41	2.0	41	86	4	114	45	15	7	31	1.73
167554--167583	2	15.0	2	92	0	51	46	3	0	50	1.18
179810--179838	7	4.3	7	95	4	51	44	0	10	44	1.38
179810--179842	13	2.5	13	86	13	50	45	0	9	45	1.35
180494--180537	22	2.0	22	86	13	63	50	0	0	50	1.00
180497--180566	31	2.3	31	89	0	104	52	4	0	42	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182141--182197	27	2.0	26	83	12	69	42	1	1	54	1.21
182193--182268	38	2.0	37	80	12	84	43	2	1	52	1.23
182423--182532	37	2.9	36	81	10	132	48	0	0	50	1.07
182457--182516	16	3.4	16	75	20	57	40	0	1	58	1.08
182450--182550	37	3.1	32	76	18	102	46	0	1	51	1.12
182558--182602	14	3.1	14	84	12	56	57	0	0	42	0.98
185811--185859	22	2.3	23	82	13	68	20	46	0	32	1.51
191895--191954	3	20.0	3	92	0	102	33	3	0	63	1.11
205879--205947	35	1.9	36	85	2	95	40	2	10	46	1.53
209271--209321	20	2.5	21	80	6	68	45	23	9	21	1.82

Tables:   1   2   3   4   5   6   7