genome.fa.s913.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000913.1 Hibiscus syriacus cultivar Beakdansim tig00001818_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1610646

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 813 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
498209--498462	83	3.1	83	95	1	456	36	22	12	28	1.91
497877--498518	271	2.4	271	98	0	1257	35	22	12	29	1.91
510904--510935	11	2.8	11	95	4	55	43	0	0	56	0.99
510931--510994	3	20.7	3	90	6	101	62	0	4	32	1.16
512117--512168	21	2.5	21	81	3	61	38	19	25	17	1.93
512157--512251	20	4.7	20	78	7	75	32	25	17	24	1.97
512746--512803	20	3.0	20	87	2	73	17	18	22	41	1.90
512940--512994	25	2.2	24	78	15	58	20	9	18	52	1.71
514123--514167	18	2.5	18	88	0	72	26	44	15	13	1.83
514649--514715	20	3.4	20	81	2	73	38	23	22	14	1.92
514704--514762	14	3.9	14	76	20	64	49	23	16	10	1.77
514688--514779	33	2.8	33	98	0	175	47	21	18	11	1.80
514688--514784	19	5.6	19	71	22	97	46	21	19	12	1.83
514796--514921	33	3.8	33	91	1	209	12	16	22	48	1.80
514798--514921	14	7.4	18	69	24	83	12	16	21	49	1.79
514906--514958	20	2.7	19	85	8	70	15	26	22	35	1.93
516818--516856	14	2.8	14	84	0	51	35	0	17	46	1.49
516993--517079	19	4.8	19	89	10	139	47	17	21	13	1.82
517098--517153	20	2.8	20	86	10	71	17	21	21	39	1.93
517367--517479	20	5.6	20	71	8	77	21	19	20	38	1.93
517443--517498	21	2.7	21	100	0	112	21	23	16	39	1.92
520812--520919	33	3.3	33	83	5	146	44	20	22	12	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
520822--520923	19	5.9	19	64	21	62	45	19	22	12	1.84
520948--520994	19	2.5	19	92	0	76	12	23	21	42	1.87
521097--521133	14	2.6	14	91	0	65	45	24	0	29	1.53
522467--522536	21	3.3	21	70	4	61	20	20	35	24	1.96
522467--522589	42	2.9	41	80	7	122	22	17	36	22	1.95
522807--522991	91	2.0	90	90	6	291	47	18	12	22	1.82
524738--524812	19	4.2	19	80	16	106	46	21	21	10	1.81
524684--524816	52	2.5	53	87	2	187	45	20	21	12	1.84
525401--525558	20	7.8	20	95	2	264	19	20	19	40	1.92
525401--525718	41	7.8	42	81	7	234	24	20	19	35	1.96
525550--525616	21	3.2	21	78	4	73	37	17	22	22	1.94
525401--525718	20	15.6	21	78	10	148	24	20	19	35	1.96
525708--525760	21	2.5	22	81	6	74	33	18	26	20	1.96
525963--526008	24	2.0	23	86	4	65	39	4	21	34	1.73
528945--528983	2	19.5	2	100	0	78	51	0	0	48	1.00
530978--531047	23	3.0	23	76	12	72	38	15	15	30	1.89
531865--531903	21	1.9	20	89	5	60	30	12	20	35	1.90
546404--546437	11	3.1	11	95	0	59	47	0	0	52	1.00
554441--554477	16	2.3	17	86	9	51	56	8	5	29	1.51
555163--555205	2	21.5	2	100	0	86	48	0	0	51	1.00
555818--556149	166	2.0	166	100	0	664	34	32	12	20	1.89
559615--559888	134	2.0	135	97	2	525	30	21	13	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
567862--568045	92	2.0	92	100	0	368	32	20	19	27	1.97
568438--568474	16	2.3	17	86	9	51	56	8	5	29	1.51
579034--579072	17	2.3	17	86	0	51	41	5	7	46	1.55
583536--583560	2	12.5	2	100	0	50	48	0	0	52	1.00
587018--587048	15	2.1	15	100	0	62	38	19	9	32	1.84
589912--589949	10	3.8	10	89	0	58	28	28	0	42	1.56
589991--590031	18	2.3	18	87	4	57	29	7	2	60	1.36
594449--594493	22	2.0	22	86	4	63	44	2	17	35	1.62
599355--599557	53	3.8	53	86	1	255	33	24	6	35	1.82
599345--599557	106	2.0	106	86	3	295	33	24	7	34	1.83
614337--614401	18	3.7	18	82	15	82	53	1	3	41	1.25
614333--614400	35	1.9	35	91	5	111	54	1	2	41	1.24
618565--618678	34	3.3	34	83	1	147	38	9	10	41	1.72
618543--618678	17	7.9	17	72	11	98	36	8	11	43	1.71
619552--619588	4	9.2	4	100	0	74	51	24	0	24	1.49
620793--620870	4	18.8	4	74	12	68	67	3	1	26	1.15
620793--620867	22	3.8	19	85	13	107	66	4	1	28	1.17
621562--621629	31	2.2	31	91	0	109	35	8	7	48	1.62
622214--622289	28	2.7	28	95	0	143	18	32	13	35	1.89
624098--624128	2	15.5	2	93	0	53	51	3	0	45	1.17
626460--626537	32	2.5	31	85	6	95	32	16	21	29	1.96
627634--627771	40	3.5	40	71	8	120	39	21	10	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
635782--635827	21	2.2	21	84	0	56	36	21	10	30	1.88
638747--638810	27	2.4	27	83	0	74	54	0	6	39	1.26
639087--639192	39	2.7	39	82	5	142	45	0	16	36	1.55
642940--642980	23	1.9	21	85	14	57	41	0	2	56	1.13
642940--642986	23	2.2	21	81	11	51	46	0	2	51	1.13
643127--643184	29	2.0	29	93	6	100	34	10	10	44	1.73
643266--643327	29	2.1	29	93	0	106	33	6	12	46	1.68
643199--643448	124	2.0	124	88	1	376	37	10	10	42	1.73
643390--643466	29	2.6	29	93	2	127	33	9	11	45	1.72
643404--643602	105	1.9	106	92	1	337	33	11	10	45	1.74
643496--643571	29	2.6	29	85	2	107	32	5	13	48	1.64
646614--646656	3	14.3	3	100	0	86	32	0	0	67	0.91
646714--646768	21	2.7	21	85	2	76	32	36	23	7	1.82
650908--650998	32	2.9	32	69	11	80	47	9	4	38	1.57
651137--651190	17	3.2	16	80	19	65	37	0	1	61	1.07
651136--651183	18	2.9	16	85	14	62	37	0	2	60	1.09
653966--654027	32	1.9	32	83	6	81	14	8	12	64	1.49
655432--656326	6	149.8	6	97	1	1694	33	33	0	33	1.58
656694--656786	42	2.2	42	94	0	159	23	22	21	32	1.98
656714--656784	22	3.3	21	69	15	65	23	21	19	35	1.96
656951--657104	53	2.9	52	94	3	272	29	21	29	19	1.98
657270--657303	14	2.3	15	90	5	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
657277--657335	3	20.3	3	79	6	68	38	1	0	59	1.08
667326--667417	42	2.2	42	82	7	107	30	19	18	31	1.96
667526--667610	42	2.0	42	95	0	152	27	20	18	34	1.96
667782--667935	53	2.9	53	93	0	272	30	22	27	20	1.98
668102--668152	20	2.5	20	90	0	75	43	1	0	54	1.11
668102--668148	14	3.3	15	85	11	55	44	2	0	53	1.12
677347--677373	13	2.1	13	100	0	54	55	14	0	29	1.40
691335--691370	12	3.0	12	91	0	54	66	5	5	22	1.34
691390--691497	29	3.7	30	74	10	91	62	10	11	16	1.55
693051--693142	3	30.7	3	91	0	148	65	1	2	31	1.12
693406--693874	43	10.6	43	66	16	215	25	17	30	26	1.97
693368--693924	134	4.2	134	90	0	837	26	17	30	26	1.97
694476--694564	38	2.4	39	80	12	107	32	12	17	37	1.88
695887--695919	2	16.5	2	100	0	66	48	0	0	51	1.00
703167--703209	5	8.2	5	92	2	59	76	2	4	16	1.05
706459--706488	15	1.9	16	93	6	53	40	0	0	60	0.97
706459--706489	16	1.9	16	93	0	53	41	0	0	58	0.98
707254--707296	20	2.2	20	87	8	61	39	25	0	34	1.56
708673--708713	3	13.7	3	94	0	73	36	0	0	63	0.95
709471--709614	64	2.2	64	82	4	166	32	18	23	25	1.97
710018--710055	20	1.9	20	94	0	67	21	39	26	13	1.89
715804--715864	20	2.9	20	85	7	77	21	31	26	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
715847--715886	21	1.9	21	89	0	62	25	40	25	10	1.86
720265--720320	2	28.0	2	96	0	103	48	0	1	50	1.11
720719--720774	23	2.4	23	87	0	85	17	23	26	32	1.97
724171--724332	64	2.5	64	81	5	184	33	19	24	23	1.97
725449--725473	2	12.5	2	100	0	50	52	0	0	48	1.00
725538--725563	2	13.0	2	100	0	52	50	0	0	50	1.00
725963--726016	23	2.3	23	87	0	81	18	25	27	27	1.98
730666--730727	23	2.7	23	90	2	90	19	24	33	22	1.97
731562--731625	21	3.3	21	64	28	59	39	21	18	20	1.93
731550--731623	37	2.0	37	100	0	148	37	21	18	21	1.94

Tables:   1   2   3   4   5   6   7