genome.fa.s913.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000913.1 Hibiscus syriacus cultivar Beakdansim tig00001818_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1610646

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 813 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1456053--1456105	20	2.8	18	81	13	63	83	1	13	1	0.82
1456056--1456104	25	2.0	25	88	8	73	81	2	14	2	0.87
1456053--1456105	13	4.4	11	80	19	61	83	1	13	1	0.82
1457241--1457516	120	2.3	120	86	2	381	32	25	16	25	1.96
1459008--1459032	9	2.8	9	100	0	50	20	8	0	72	1.10
1459140--1459187	24	2.0	24	88	4	71	29	2	6	62	1.31
1459244--1459302	15	3.9	15	77	16	52	13	5	3	77	1.05
1459252--1459302	16	3.3	16	78	13	54	11	5	3	78	1.06
1459272--1459353	12	7.2	11	74	17	60	9	8	4	76	1.14
1459271--1459349	40	2.0	40	85	5	106	8	8	5	77	1.13
1459276--1459335	23	2.6	24	80	15	72	10	8	6	75	1.20
1465266--1465302	2	18.5	2	100	0	74	48	0	0	51	1.00
1466175--1466199	6	4.2	6	100	0	50	48	0	36	16	1.46
1467531--1467598	31	2.2	31	89	5	102	54	13	4	27	1.58
1468928--1469007	40	2.0	40	90	0	124	46	5	25	23	1.72
1470924--1471213	152	1.9	153	98	0	564	37	4	5	52	1.46
1479403--1479465	25	2.6	24	85	9	83	31	6	3	58	1.39
1480550--1480613	24	2.6	24	78	14	69	32	6	3	57	1.39
1480729--1480775	24	2.0	24	83	8	60	23	8	27	40	1.83
1488281--1488330	20	2.5	20	100	0	100	26	20	20	34	1.96
1490183--1490218	15	2.6	15	87	12	51	50	5	2	41	1.40
1497826--1497865	16	2.5	16	95	0	71	25	27	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1498386--1498465	30	2.7	29	83	11	90	62	2	16	18	1.44
1498386--1498443	30	2.0	30	89	3	91	62	3	17	17	1.47
1499869--1499934	3	22.0	3	84	6	89	62	1	1	34	1.14
1500181--1500478	131	2.3	131	82	2	339	28	16	27	27	1.97
1500512--1500864	60	5.7	59	80	6	348	28	15	18	37	1.91
1500512--1500864	121	2.9	122	85	3	485	28	15	18	37	1.91
1505115--1505200	30	2.9	30	81	6	86	60	3	15	20	1.49
1506602--1506670	3	23.7	3	88	5	106	62	0	0	37	0.96
1509461--1509499	11	3.6	11	79	6	53	33	0	7	58	1.26
1513203--1513428	115	2.0	115	99	0	443	35	12	19	32	1.89
1519836--1519923	38	2.2	40	92	8	153	48	9	19	22	1.76
1520198--1520269	20	3.5	20	67	10	56	30	19	19	30	1.96
1520198--1520292	41	2.3	42	90	1	147	31	18	17	31	1.95
1520976--1521001	12	2.2	12	100	0	52	65	15	0	19	1.27
1523011--1523056	22	2.0	23	95	4	85	45	17	10	26	1.81
1530865--1530892	14	2.0	14	100	0	56	21	7	21	50	1.72
1532211--1532259	20	2.6	18	83	9	53	30	14	4	51	1.61
1537955--1537995	21	1.9	22	95	5	75	24	19	19	36	1.95
1539310--1539353	23	2.0	22	86	4	61	34	4	2	59	1.30
1539909--1539948	18	2.2	18	100	0	80	25	25	10	40	1.86
1539915--1539956	18	2.3	18	91	0	66	23	26	11	38	1.90
1546046--1546263	112	1.9	112	93	0	373	23	6	14	55	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1547336--1547382	12	3.8	12	85	2	58	27	0	6	65	1.16
1547437--1547485	18	2.5	20	83	9	66	24	4	0	71	1.03
1547441--1547495	18	3.0	18	84	10	58	25	5	0	69	1.10
1550235--1550425	45	4.2	45	91	4	278	26	20	5	47	1.72
1550294--1550410	22	5.2	22	66	19	71	23	22	5	48	1.70
1550806--1551426	54	11.5	54	87	0	803	33	18	18	29	1.95
1554861--1555043	45	4.0	45	92	3	296	25	21	7	45	1.77
1555048--1555282	81	2.9	81	86	2	323	30	19	12	37	1.89
1555215--1555418	67	3.0	68	89	1	293	29	25	15	30	1.95
1555641--1556170	54	9.9	54	89	2	712	33	19	18	29	1.95
1556086--1556169	27	3.1	27	63	24	68	33	17	19	29	1.95
1556210--1556239	16	1.9	15	93	6	51	46	10	3	40	1.54
1564912--1564952	17	2.4	17	91	0	73	26	17	29	26	1.97
1568010--1568082	23	3.3	21	79	11	56	38	19	5	36	1.75
1568025--1568087	23	2.7	23	92	0	99	36	20	4	38	1.74
1568518--1569207	200	3.5	200	96	0	1263	29	17	15	37	1.91
1569308--1569368	19	3.3	18	88	2	59	52	11	1	34	1.47
1569320--1569368	19	2.6	19	96	0	89	55	10	2	32	1.45
1571156--1571221	33	2.0	33	87	0	96	22	50	0	27	1.50
1571255--1571319	21	3.1	21	93	0	103	16	30	10	41	1.83
1573377--1573419	20	2.3	18	85	14	61	20	16	11	51	1.75
1573405--1573742	161	2.1	162	88	0	489	28	16	14	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1573892--1574031	69	2.0	70	98	1	273	34	19	26	20	1.96
1582167--1582210	17	2.6	17	88	0	70	29	15	31	22	1.95
1582167--1582217	17	3.0	17	85	0	57	33	13	29	23	1.93
1585226--1585272	20	2.3	20	88	3	67	40	23	4	31	1.74
1585231--1585300	23	3.2	22	82	10	72	38	20	5	35	1.76
1585702--1585771	22	3.3	20	77	14	77	37	21	5	35	1.77
1585715--1585776	22	2.8	22	92	2	97	35	24	4	35	1.77
1584835--1586208	475	2.9	479	92	4	2262	40	10	7	40	1.69
1586199--1586883	196	3.5	199	94	2	1200	29	18	15	36	1.92
1586982--1587042	19	3.3	18	88	2	59	52	11	1	34	1.47
1586994--1587042	19	2.6	19	96	0	89	55	10	2	32	1.45
1588825--1588890	33	2.0	33	87	0	96	22	50	0	27	1.50
1588924--1588988	21	3.1	21	93	0	103	16	30	10	41	1.83
1591210--1591252	20	2.3	18	85	14	61	20	16	11	51	1.75
1591402--1591457	20	2.8	20	82	15	71	17	14	14	53	1.73
1591182--1591654	181	2.6	181	86	0	640	27	15	13	43	1.84
1599579--1599622	17	2.6	17	88	0	70	29	15	31	22	1.95
1599579--1599629	17	3.0	17	85	0	57	33	13	29	23	1.93
1602656--1602728	23	3.3	21	79	11	56	38	19	5	36	1.75
1602671--1602733	23	2.7	23	92	0	99	36	20	4	38	1.74
1603157--1603840	200	3.5	199	95	1	1207	29	18	15	36	1.92
1603952--1603999	19	2.6	19	93	3	80	54	10	2	33	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1605774--1605839	33	2.0	33	87	0	96	22	50	0	27	1.50
1605873--1605937	21	3.1	21	93	0	103	16	30	10	41	1.83
1608152--1608194	20	2.3	18	85	14	61	20	16	11	51	1.75
1608338--1608388	20	2.5	20	84	12	68	15	13	13	56	1.67
1608124--1608596	181	2.6	182	88	0	669	27	15	13	43	1.85

Tables:   1   2   3   4   5   6   7

The End!