genome.fa.s914.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000914.1 Hibiscus syriacus cultivar Beakdansim tig00001825_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1342319

Tables:   1   2   3   4   5   6   

This is table  1  of  6  ( 706 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1581--1622	19	2.2	20	83	12	52	19	14	0	66	1.25
1588--1628	20	2.1	20	82	13	50	19	17	0	63	1.31
5354--5387	16	2.2	15	89	5	50	17	8	0	73	1.08
9269--9326	16	3.6	16	75	13	57	67	1	0	31	1.01
9272--9315	9	5.1	9	81	10	56	65	0	0	34	0.93
9267--9322	25	2.3	25	78	3	69	67	3	0	28	1.07
20694--20731	14	2.6	15	87	4	51	23	21	21	34	1.97
26592--26749	21	7.8	20	72	7	86	38	25	17	18	1.92
26716--26870	40	3.8	40	82	4	186	37	26	18	18	1.93
26716--26869	20	7.7	20	80	7	168	37	26	18	18	1.93
27252--27322	33	2.2	33	86	0	97	14	22	15	47	1.81
27401--27478	41	1.9	41	97	0	147	44	16	25	12	1.83
27402--27477	21	3.7	21	83	3	109	46	17	25	11	1.82
27462--27518	14	3.7	14	70	20	51	43	22	22	10	1.84
27454--27534	33	2.5	33	93	0	135	46	22	20	9	1.80
27530--27627	19	5.7	19	69	22	90	11	22	21	44	1.83
27552--27641	14	5.7	14	69	23	63	10	23	22	44	1.82
27535--27649	33	3.5	33	97	0	221	10	22	20	46	1.80
29341--29903	93	6.1	93	99	0	1101	21	12	19	46	1.83
29951--30079	19	7.3	19	75	17	125	45	28	17	8	1.77
29987--30079	33	2.8	32	91	4	150	46	27	18	7	1.76
29951--30079	52	2.5	52	74	14	140	45	28	17	8	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30075--30209	19	7.6	19	75	16	128	11	18	23	45	1.82
30097--30153	14	3.7	14	75	20	51	12	19	22	45	1.83
30080--30172	33	2.8	33	93	0	159	11	19	21	47	1.81
32131--32166	14	2.6	14	95	0	63	33	0	22	44	1.53
32273--32388	19	6.4	19	87	9	179	45	17	22	14	1.84
32291--32407	52	2.2	52	96	0	216	43	17	24	13	1.86
32273--32402	71	1.9	68	87	7	192	44	17	23	13	1.85
32397--32585	19	10.7	19	78	17	219	15	21	17	45	1.85
32397--32599	52	3.9	52	86	10	281	14	21	18	45	1.85
32454--32599	33	4.2	33	81	13	195	13	21	18	46	1.83
35026--35073	24	2.0	24	88	8	71	37	20	14	27	1.92
35756--35985	20	11.5	20	85	1	237	19	18	24	36	1.94
35972--36054	21	4.0	21	73	6	78	25	16	24	33	1.96
35952--36050	42	2.4	43	77	11	100	21	18	23	37	1.94
41683--41741	31	1.9	31	92	0	100	40	6	10	42	1.65
41756--42208	54	8.4	54	73	17	243	52	12	0	34	1.41
41788--41901	32	3.8	31	75	18	132	54	13	0	31	1.45
41825--41924	26	3.6	26	76	15	110	55	17	1	27	1.49
41793--41924	58	2.3	58	95	0	237	54	15	0	29	1.46
41771--42028	138	1.9	134	90	3	408	53	14	0	31	1.44
41926--42029	32	3.6	32	74	24	129	51	14	0	33	1.42
41958--42000	22	2.0	22	100	0	86	51	13	0	34	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41960--42008	22	2.2	22	88	3	71	55	14	0	30	1.40
41963--42208	131	1.9	134	95	2	453	52	11	0	35	1.38
42065--42139	22	3.2	23	71	17	73	54	14	0	30	1.41
41756--42208	185	2.4	189	92	2	752	52	12	0	34	1.41
42111--42208	32	3.4	32	72	26	117	54	8	0	37	1.31
42143--42243	22	4.5	22	70	7	76	52	7	0	39	1.31
41980--42163	80	2.3	77	87	10	253	51	13	0	35	1.41
42188--42335	15	9.5	15	83	10	172	50	2	0	46	1.15
42134--42290	69	2.3	67	86	5	210	51	5	0	43	1.23
42108--42319	54	4.3	50	79	15	171	50	5	0	43	1.24
42108--42319	30	6.4	34	77	12	144	50	5	0	43	1.24
42162--42335	45	3.7	45	80	11	188	50	3	0	45	1.18
43300--43351	22	2.4	22	75	15	54	46	3	1	48	1.31
43362--43391	15	2.0	15	100	0	60	40	0	0	60	0.97
43365--43414	26	2.0	25	85	11	68	46	2	0	52	1.12
43372--43455	18	4.6	18	74	12	73	45	1	1	52	1.16
43434--43496	27	2.3	26	80	17	67	42	3	0	53	1.16
44109--44138	2	15.0	2	100	0	60	50	0	0	50	1.00
46471--46522	14	4.0	14	74	23	51	75	0	5	19	1.01
46472--46525	24	2.3	23	87	12	76	77	0	3	18	0.91
46475--46526	5	10.8	5	78	15	56	76	0	3	19	0.93
46475--46526	19	2.7	19	82	11	70	76	0	3	19	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46622--46682	31	2.0	30	84	9	79	42	4	6	45	1.51
46544--46956	37	11.5	37	77	13	341	44	5	3	46	1.44
46888--46949	33	1.9	32	86	3	88	50	8	1	40	1.42
47022--47068	2	25.0	2	85	12	64	55	0	0	44	0.99
47035--47079	21	2.1	21	88	8	65	64	2	0	33	1.06
47700--48132	84	5.2	84	81	2	503	26	19	24	30	1.98
48247--49012	110	7.0	110	91	1	1175	24	17	22	35	1.95
54063--54216	45	3.4	45	88	2	220	31	23	7	37	1.82
54213--54255	20	2.2	20	86	0	59	53	20	6	18	1.67
54613--55098	237	2.1	237	98	0	945	36	17	11	35	1.85
55569--55604	14	2.6	14	100	0	72	22	13	19	44	1.86
61974--62052	20	3.8	21	77	9	72	24	36	25	13	1.92
64269--64301	11	3.0	11	100	0	66	18	0	27	54	1.44
64315--64357	20	2.2	20	100	0	86	37	0	44	18	1.50
66506--66566	5	12.2	5	81	8	63	72	0	3	24	1.00
66506--66566	19	3.1	19	83	7	68	72	0	3	24	1.00
66506--66561	14	3.9	14	81	9	60	73	0	3	23	0.99
66587--66660	32	2.3	32	84	6	89	44	5	2	47	1.40
66581--67020	76	6.2	72	80	9	365	44	5	3	46	1.43
66581--67020	37	12.3	37	78	13	372	44	5	3	46	1.43
67067--67104	19	2.0	19	85	10	51	65	0	0	34	0.93
68023--68078	3	18.3	3	79	17	62	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68021--68078	22	2.7	22	87	10	84	31	0	0	68	0.89
68019--68071	8	7.0	8	75	25	53	28	0	0	71	0.86
69614--69675	30	2.1	30	87	6	90	17	9	11	61	1.56
69880--69922	19	2.3	19	83	0	50	25	4	9	60	1.47
71733--71792	31	2.0	31	83	9	79	15	16	11	56	1.67
75348--75431	4	21.0	4	76	13	84	50	25	1	23	1.57
75348--75431	20	4.4	20	78	14	97	50	25	1	23	1.57
76430--76533	29	3.7	28	89	5	165	30	9	15	44	1.78
76430--76548	29	4.2	27	88	6	116	31	9	14	45	1.76
76544--76646	52	2.0	53	96	1	190	32	13	17	36	1.89
76634--76697	30	2.1	30	94	0	110	35	9	14	40	1.78
76650--76789	67	2.1	66	82	7	176	29	13	11	45	1.78
77708--77784	28	2.6	28	82	17	95	25	15	11	46	1.80
77734--77804	28	2.5	28	84	4	90	25	14	12	47	1.79
77833--78064	43	5.5	40	71	14	146	25	30	19	24	1.98
77830--78160	129	2.6	130	88	2	461	25	29	19	25	1.99
78348--78403	3	18.3	3	79	17	62	32	0	0	67	0.91
78346--78403	22	2.7	22	87	10	84	31	0	0	68	0.89
78344--78396	8	7.0	8	75	25	53	28	0	0	71	0.86
79943--80004	30	2.1	30	87	6	90	17	9	11	61	1.56
80210--80252	19	2.3	19	83	0	50	25	4	9	60	1.47
84578--84620	15	3.0	14	76	6	50	39	0	4	55	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95198--95231	16	2.1	16	94	0	59	32	8	26	32	1.87
106101--106176	32	2.4	33	82	10	95	42	7	3	46	1.51
107397--107432	5	7.2	5	100	0	72	0	61	0	38	0.96
108465--108563	42	2.4	42	78	0	117	26	11	19	43	1.84
111715--111773	31	1.9	31	92	0	100	13	32	20	33	1.91
113529--113573	21	2.1	21	87	0	63	31	28	24	15	1.96
115060--115087	14	2.0	14	100	0	56	28	7	28	35	1.84
115188--115502	149	2.1	149	95	1	560	27	16	20	34	1.95
115470--115514	23	2.0	23	86	0	63	24	26	24	24	2.00
116640--116682	21	2.1	20	82	4	50	27	0	16	55	1.41

Tables:   1   2   3   4   5   6