genome.fa.s914.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000914.1 Hibiscus syriacus cultivar Beakdansim tig00001825_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1342319

Tables:   1   2   3   4   5   6   

This is table  5  of  6  ( 706 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
940929--940972	21	2.1	21	100	0	88	50	13	18	18	1.79
941039--941083	21	2.1	21	100	0	90	51	13	17	17	1.77
940929--941151	111	2.0	111	100	0	446	39	17	21	22	1.93
943582--943612	15	2.1	15	100	0	62	45	22	19	12	1.84
944839--944884	19	2.4	20	82	7	60	52	2	0	45	1.13
950244--950275	11	2.9	11	95	0	55	65	0	0	34	0.93
956361--956554	95	2.0	96	93	4	336	37	10	21	30	1.87
960459--960498	20	2.0	20	100	0	80	35	10	30	25	1.88
960459--960509	20	2.8	18	88	11	61	39	9	25	25	1.86
962683--962772	46	2.0	45	84	6	119	42	3	2	52	1.30
971899--971974	36	2.1	36	85	7	100	47	1	3	47	1.29
972113--972158	20	2.4	18	83	13	65	15	23	10	50	1.75
972120--972170	20	2.5	20	90	0	75	19	21	11	47	1.81
972133--972177	20	2.2	20	84	0	54	24	26	6	42	1.79
973303--973352	20	2.5	20	80	6	57	34	8	6	52	1.55
978216--978250	16	2.1	18	89	10	56	40	0	14	45	1.45
979937--979968	12	2.7	12	95	0	55	28	6	50	15	1.68
980825--980886	31	1.9	33	90	6	101	19	0	17	62	1.32
980834--980903	31	2.3	31	85	5	88	21	1	17	60	1.44
980850--980959	48	2.4	44	77	11	121	15	4	13	66	1.40
981961--981997	16	2.3	17	81	13	51	54	0	8	37	1.30
988650--988692	21	2.0	21	86	0	59	30	27	25	16	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
989376--989420	23	2.0	23	86	0	63	20	26	26	26	1.99
995438--995480	21	2.0	21	86	0	59	30	27	25	16	1.97
996011--996075	25	2.6	25	95	0	121	16	29	23	30	1.96
996194--996238	23	2.0	23	86	0	63	20	26	26	26	1.99
1000625--1000688	21	3.4	20	66	29	59	31	4	18	45	1.70
1000617--1000738	35	3.4	36	86	6	176	34	4	17	43	1.70
1012590--1012774	31	6.0	31	96	1	327	20	19	22	38	1.94
1013551--1013591	2	21.0	2	87	5	57	46	0	2	51	1.14
1016805--1016872	31	2.2	31	97	0	127	19	20	19	41	1.91
1017637--1017693	18	3.2	18	100	0	114	17	50	21	10	1.75
1017682--1017710	15	1.9	15	100	0	58	13	34	27	24	1.93
1017682--1017728	10	5.5	8	82	14	51	14	34	25	25	1.94
1018997--1019031	18	1.9	18	88	0	52	54	0	17	28	1.43
1022802--1022872	18	4.3	18	77	17	82	16	47	21	14	1.81
1022806--1022872	30	2.2	31	89	2	109	16	46	22	14	1.84
1022810--1022879	25	2.5	26	79	20	88	15	44	22	17	1.86
1022824--1022859	13	2.8	13	87	4	56	16	47	22	13	1.82
1026593--1026715	31	4.0	31	95	2	212	19	19	22	38	1.94
1045529--1045594	18	3.6	18	77	22	66	19	9	0	71	1.12
1045813--1045876	26	2.5	26	97	0	119	20	9	0	70	1.14
1046405--1046442	13	2.9	13	96	0	67	28	42	15	13	1.85
1049689--1049870	95	1.9	95	93	2	312	31	18	19	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1050780--1050812	14	2.4	14	100	0	66	30	33	15	21	1.94
1051171--1051264	36	2.6	36	94	1	161	27	18	10	43	1.83
1051202--1051272	21	3.7	21	66	21	64	30	18	7	43	1.76
1051298--1051463	37	4.5	37	86	3	219	25	17	12	44	1.84
1051303--1051463	73	2.2	73	97	0	304	24	18	12	45	1.83
1051484--1051583	36	2.9	34	80	7	103	25	19	11	45	1.82
1051593--1051686	33	2.7	34	83	6	127	38	19	9	32	1.84
1052977--1053019	17	2.6	16	79	17	52	27	4	2	65	1.25
1052994--1053055	26	2.4	26	72	5	63	32	3	1	62	1.20
1053111--1053169	13	4.8	12	80	17	52	22	6	0	71	1.09
1053100--1053197	26	3.8	26	76	21	91	19	10	0	70	1.15
1053220--1053248	13	2.1	14	93	6	51	20	6	3	68	1.27
1054449--1054499	24	2.2	23	80	16	61	60	7	0	31	1.25
1054963--1055606	329	2.0	326	92	4	1093	38	10	7	43	1.67
1055665--1055726	22	2.7	23	87	5	90	38	19	4	37	1.73
1055655--1055726	23	3.2	23	84	4	92	40	20	4	34	1.72
1056113--1056198	39	2.2	39	93	2	147	17	13	20	47	1.82
1056453--1056489	18	2.1	18	89	0	56	51	10	5	32	1.60
1057146--1057185	21	2.0	21	85	5	55	47	7	15	30	1.72
1057198--1057260	23	2.7	23	90	0	90	38	17	6	38	1.75
1057277--1057323	21	2.2	22	81	11	62	36	10	12	40	1.78
1057586--1057650	25	2.6	25	78	2	78	41	13	9	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1060082--1061114	183	5.7	183	97	0	1874	33	16	14	34	1.90
1060082--1061114	364	2.8	365	96	0	1879	33	16	14	34	1.90
1062596--1062674	3	26.3	3	75	0	68	24	34	6	35	1.81
1062596--1062682	12	7.2	12	82	0	93	22	34	6	35	1.81
1062604--1062682	36	2.2	36	88	0	113	21	35	7	35	1.82
1062596--1062685	18	5.0	18	75	5	92	22	34	6	36	1.80
1062600--1062685	6	14.3	6	77	0	64	20	34	6	37	1.80
1064143--1064891	198	3.9	197	86	10	1079	31	16	15	36	1.90
1064490--1064854	177	2.1	178	96	2	673	31	16	15	36	1.90
1065008--1065056	19	2.6	19	93	0	80	57	10	2	30	1.43
1066844--1066909	33	2.0	33	90	0	105	22	48	0	28	1.51
1066943--1067007	21	3.1	21	80	6	69	15	29	15	40	1.88
1069227--1069268	19	2.3	18	92	8	68	21	16	11	50	1.77
1069232--1069277	19	2.4	19	81	3	65	19	17	10	52	1.74
1069507--1069943	223	1.9	226	93	3	749	39	7	7	45	1.61
1076962--1077126	82	2.0	82	98	0	321	21	14	17	46	1.83
1082273--1082333	18	3.3	18	86	4	68	39	8	27	24	1.84
1084048--1084074	2	13.5	2	100	0	54	51	0	0	48	1.00
1090734--1090790	30	1.9	30	82	7	71	29	8	29	31	1.87
1091441--1091515	2	37.5	2	100	0	150	49	0	0	50	1.00
1093206--1093258	2	26.5	2	96	0	97	49	1	0	49	1.12
1100626--1100675	24	2.0	27	84	11	70	60	4	4	32	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1108640--1108690	20	2.5	20	100	0	102	19	25	35	19	1.95
1140512--1140809	150	2.0	149	84	4	386	39	10	6	43	1.65
1147906--1148149	128	1.9	128	97	0	461	24	24	17	34	1.96
1148474--1148573	33	3.0	34	80	2	130	38	3	4	55	1.34
1149093--1149186	21	4.5	21	92	5	129	20	26	35	18	1.95
1149190--1149231	21	2.0	21	85	0	57	23	11	38	26	1.90
1151977--1152164	97	1.9	97	95	0	340	36	19	11	32	1.88
1152975--1153026	3	17.3	3	100	0	104	32	0	0	67	0.91
1158880--1158934	24	2.3	23	81	6	56	41	1	5	50	1.36
1161883--1161962	38	2.1	39	81	9	94	50	5	0	45	1.23
1165520--1165585	21	3.2	21	63	4	53	25	16	21	36	1.94
1165517--1165625	41	2.7	41	91	1	175	22	17	22	38	1.93
1166331--1166396	19	3.3	19	68	12	60	39	22	19	18	1.92
1166346--1166417	22	3.4	22	71	11	78	37	26	18	18	1.93
1166324--1166418	41	2.3	41	94	0	172	38	25	16	18	1.92
1166340--1166472	41	3.2	42	85	4	164	39	22	18	18	1.92
1166654--1168663	232	8.7	235	89	6	2948	39	12	9	38	1.76
1166654--1168663	463	4.3	475	89	6	3068	39	12	9	38	1.76
1169557--1169595	20	2.0	20	94	0	69	28	0	2	69	1.02
1170372--1170699	166	2.0	162	97	2	620	35	21	13	30	1.91
1174864--1175391	263	2.0	264	99	0	1040	33	14	25	26	1.94
1176577--1176618	21	2.0	21	85	0	57	30	2	19	47	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1189395--1189441	19	2.5	19	92	0	76	51	25	14	8	1.71
1189459--1189524	33	2.0	34	87	3	98	12	25	21	40	1.88
1189437--1189549	19	6.1	19	76	13	110	13	23	18	44	1.85
1191695--1191761	21	3.2	21	66	6	55	23	35	20	19	1.95
1193259--1193315	14	3.7	14	75	20	60	43	22	22	10	1.84
1193241--1193331	33	2.8	33	91	3	139	45	20	19	14	1.85
1193241--1193299	19	3.4	18	73	22	63	47	20	18	13	1.82
1193326--1193436	33	3.4	31	87	9	159	15	23	19	41	1.89
1193294--1193430	66	2.1	66	80	2	150	21	23	19	35	1.96
1193346--1193436	19	5.3	19	68	24	85	16	20	19	42	1.89

Tables:   1   2   3   4   5   6