genome.fa.s914.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000914.1 Hibiscus syriacus cultivar Beakdansim tig00001825_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1342319

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 706 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116880--116909	15	2.0	15	93	0	51	43	6	20	30	1.77
117386--117447	27	2.2	28	80	5	72	50	1	20	27	1.58
118204--118459	41	6.2	41	78	3	217	35	16	18	29	1.93
118406--118492	41	2.1	41	81	8	97	35	16	16	32	1.91
122282--122333	26	2.0	26	100	0	104	23	7	7	61	1.49
137074--137140	15	4.5	15	78	10	66	41	5	16	35	1.73
137070--137140	30	2.4	30	90	2	108	45	5	15	33	1.70
137123--137191	20	3.5	20	95	0	120	40	10	13	36	1.78
137356--137429	28	2.5	29	84	8	87	52	1	1	44	1.17
137404--137464	20	3.1	18	70	20	50	44	1	1	52	1.20
137406--137497	23	4.0	22	69	25	66	44	1	1	53	1.15
137408--137492	13	6.6	13	68	17	61	43	1	1	54	1.15
137453--137523	20	3.5	20	77	11	65	49	0	0	50	1.00
137457--137517	9	6.2	9	75	22	52	49	0	0	50	1.00
137702--137816	42	2.7	42	97	0	212	44	20	18	17	1.87
138768--138917	33	4.5	33	82	0	174	36	18	27	18	1.94
141739--141812	3	25.7	3	81	13	93	32	1	0	66	1.00
141742--141812	37	1.9	37	88	5	108	32	1	0	66	1.01
142315--142371	28	2.1	27	81	15	64	63	24	12	0	1.29
143147--143189	23	1.9	22	86	13	61	27	0	6	65	1.18
143936--143993	28	2.1	27	84	6	73	32	5	1	60	1.29
143936--143996	29	2.1	28	82	8	70	31	4	1	62	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153402--153472	22	3.2	22	91	0	115	30	16	11	40	1.84
153399--153484	44	2.0	44	88	0	127	32	16	13	37	1.88
153818--154245	113	3.7	113	84	5	481	37	14	20	28	1.91
154608--154676	3	23.7	3	82	11	90	31	1	0	66	1.00
155986--156031	22	2.0	23	84	12	60	28	0	8	63	1.24
157245--157298	20	2.7	20	85	0	72	35	27	9	27	1.87
157331--157377	20	2.3	20	88	0	67	31	25	21	21	1.98
157547--157589	22	2.0	22	85	0	59	20	46	11	20	1.82
157927--157965	20	2.0	20	94	0	69	51	17	12	17	1.76
157971--158019	20	2.5	20	86	3	64	10	18	22	48	1.77
157982--158052	20	3.8	20	73	21	73	12	18	21	47	1.81
158016--158059	20	2.2	20	87	0	61	15	15	20	47	1.82
159422--159609	31	6.0	31	77	6	191	31	19	18	30	1.96
159447--159612	63	2.7	63	96	0	298	31	18	18	31	1.95
160883--160937	11	5.5	11	68	24	50	21	25	20	32	1.97
160875--160944	19	3.7	19	100	0	140	22	25	21	30	1.99
164074--164130	30	1.9	30	100	0	114	31	24	21	22	1.98
164134--164305	31	5.5	31	73	6	114	30	19	16	33	1.95
164185--164302	32	3.7	31	75	15	125	31	16	16	34	1.92
164157--164322	63	2.7	63	92	0	262	31	16	16	34	1.92
165521--165677	64	2.5	64	76	12	153	26	19	19	34	1.96
167259--167357	42	2.4	42	92	0	162	27	36	19	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
167472--167524	21	2.5	21	93	0	88	20	13	28	37	1.90
167929--167983	21	2.6	21	97	0	101	21	40	20	18	1.92
169526--169601	29	2.6	29	97	0	143	27	25	18	28	1.98
172033--172079	24	2.0	24	95	0	85	34	17	21	27	1.95
172037--172088	24	2.2	24	85	0	68	36	19	19	25	1.95
187832--187937	41	2.6	41	86	0	158	20	18	23	36	1.95
187857--187929	20	3.6	20	68	3	65	13	21	24	39	1.90
187962--188045	33	2.5	33	94	1	141	20	17	27	34	1.95
188003--188066	21	3.1	21	75	4	76	17	18	26	37	1.93
188177--188224	6	8.5	6	97	2	75	29	54	16	0	1.43
188711--188751	5	7.6	5	97	2	55	0	19	53	26	1.45
188714--188755	6	7.5	6	97	2	63	0	16	54	28	1.42
188865--188917	22	2.4	22	96	0	97	35	28	16	18	1.93
188909--189104	20	9.6	20	71	10	146	40	23	19	16	1.91
188906--189121	41	5.3	41	90	2	344	39	24	18	18	1.92
188884--189133	21	12.1	21	69	10	95	40	24	17	17	1.91
191181--191235	21	2.6	21	88	0	83	20	12	9	58	1.61
214926--214950	2	12.5	2	100	0	50	52	0	48	0	1.00
218401--218441	19	2.3	19	87	8	59	26	2	0	70	0.99
225555--225579	12	2.1	12	100	0	50	40	16	0	44	1.47
229526--229619	48	2.0	48	86	0	134	35	12	18	34	1.88
230087--230130	23	2.0	22	90	4	70	36	13	13	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
231790--231829	20	2.0	20	90	4	64	55	7	0	37	1.29
232873--232995	32	3.9	32	79	12	137	35	21	16	26	1.94
232873--232994	63	1.9	64	86	1	174	36	21	16	26	1.94
237267--237326	31	1.9	31	82	0	75	68	0	13	18	1.21
244779--244839	20	3.1	19	88	6	86	19	34	29	16	1.94
245012--245044	11	3.0	11	95	0	57	51	9	0	39	1.34
245116--245177	20	3.0	21	90	4	92	19	35	29	16	1.93
246441--246488	19	2.5	20	82	3	62	52	6	12	29	1.63
251023--251119	51	1.9	51	80	4	115	30	12	12	44	1.79
254716--254753	18	2.2	18	85	4	51	26	2	0	71	1.00
262752--262789	20	1.9	20	88	0	58	21	26	10	42	1.85
271419--271482	21	3.4	20	66	29	59	29	6	18	45	1.74
271384--271530	35	4.2	36	84	7	169	33	6	17	42	1.74
276003--276140	35	3.9	34	82	11	138	33	5	17	44	1.71
276024--276140	35	3.3	35	89	6	173	34	3	17	44	1.66
282845--282871	2	13.5	2	100	0	54	0	48	0	51	1.00
303296--303333	19	1.9	19	89	5	58	63	0	2	34	1.09
304794--304925	70	1.9	70	91	0	219	34	14	15	36	1.87
312346--312376	14	2.2	14	100	0	62	45	29	19	6	1.75
312861--313306	228	2.0	223	92	2	748	45	7	7	39	1.61
313356--313412	19	3.1	18	82	9	69	54	14	14	17	1.71
313529--313575	20	2.4	19	82	10	67	53	10	17	19	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
313538--313580	20	2.3	19	88	11	63	51	11	16	20	1.75
315780--315844	21	3.1	21	80	6	69	40	15	29	15	1.88
315878--315943	33	2.0	33	90	0	105	28	0	48	22	1.51
316012--316055	18	2.5	19	85	10	58	59	0	40	0	0.98
317623--317671	19	2.6	19	90	6	73	30	4	10	55	1.52
317796--318864	196	5.5	197	96	2	1930	36	15	16	32	1.90
317796--318877	391	2.8	390	96	2	1955	36	15	16	32	1.90
320322--320383	18	3.4	18	79	0	79	37	9	35	17	1.83
320322--320407	6	14.3	6	77	0	64	37	8	34	19	1.82
320337--320411	3	25.0	3	73	0	60	36	6	34	22	1.81
320325--320403	36	2.2	36	90	0	122	35	8	35	20	1.84
320325--320407	12	6.9	12	83	0	94	36	8	34	20	1.83
321834--323189	183	7.4	183	98	0	2547	35	13	16	33	1.88
321834--323189	365	3.7	366	97	0	2547	35	13	16	33	1.88
325670--325723	23	2.3	23	93	0	90	37	5	16	40	1.72
326153--326189	18	2.1	18	89	0	56	32	5	10	51	1.60
326145--326191	24	2.0	24	86	0	67	34	4	14	46	1.64
326446--326532	39	2.2	39	91	0	147	48	19	13	18	1.81
326953--327015	23	2.7	23	95	0	108	36	4	19	39	1.72
327386--327458	23	3.2	23	88	0	101	34	4	21	39	1.73
326741--327807	433	2.5	433	97	1	2018	41	7	12	38	1.71
334405--334441	10	3.7	10	85	0	56	75	2	0	21	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
336905--336968	18	3.6	18	91	0	101	14	28	29	28	1.95
336905--336991	36	2.4	36	82	0	93	19	25	27	27	1.99
343031--343101	19	3.7	19	90	7	117	30	15	32	21	1.94
344633--344691	10	5.7	10	84	7	73	23	5	3	67	1.26
344633--344691	21	2.8	20	85	7	73	23	5	3	67	1.26
346913--346971	31	1.9	31	85	0	82	54	1	0	44	1.10
348402--348446	3	15.3	3	86	4	65	62	0	0	37	0.96
348402--348462	21	3.0	21	85	7	72	59	0	0	40	0.98
350669--350701	17	1.9	17	100	0	66	36	0	0	63	0.95
356622--356647	2	13.0	2	100	0	52	50	0	0	50	1.00

Tables:   1   2   3   4   5   6