genome.fa.s9149.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009149.1 Hibiscus syriacus cultivar Beakdansim tig00112673_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1143513

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 649 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
566190--566233	18	2.4	18	88	0	61	15	6	36	40	1.74
566823--566847	12	2.1	12	100	0	50	8	24	24	44	1.80
567071--567104	12	2.8	12	95	0	59	26	26	5	41	1.78
572640--572683	18	2.4	18	84	0	52	18	6	34	40	1.77
573651--573686	17	2.1	17	89	0	54	50	8	8	33	1.63
580950--580989	18	2.2	18	100	0	80	25	5	15	55	1.60
582142--582173	15	2.1	15	100	0	64	12	12	6	68	1.37
582528--582603	36	2.1	36	97	0	143	43	14	10	31	1.79
588173--588211	19	2.0	19	85	14	53	33	7	17	41	1.79
588899--588952	23	2.3	23	87	0	72	37	25	12	24	1.91
589045--589105	20	3.0	20	78	0	68	57	16	13	13	1.66
591636--591675	21	1.9	21	89	0	62	55	7	7	30	1.56
598187--598342	64	2.4	65	81	8	167	30	21	18	28	1.97
600516--600547	2	16.0	2	100	0	64	50	0	0	50	1.00
600795--600869	6	12.5	6	76	5	53	4	6	40	49	1.48
601498--601633	61	2.2	61	92	0	227	36	11	6	46	1.65
601723--601755	9	3.7	9	84	15	50	36	0	9	54	1.32
601716--601807	18	5.3	18	72	15	77	41	5	5	47	1.49
601690--601807	50	2.3	51	89	1	175	41	5	6	45	1.55
601741--601813	32	2.3	32	86	6	96	39	6	5	47	1.53
601816--601877	18	3.3	18	86	8	72	45	6	6	41	1.55
602030--602143	7	16.6	7	73	13	51	45	3	7	43	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
602035--602076	9	4.4	9	78	21	50	45	0	7	47	1.30
602030--602144	20	5.7	20	73	13	78	46	3	6	43	1.47
602059--602118	27	2.2	27	93	0	102	50	3	8	38	1.49
602151--602198	24	2.0	24	84	8	62	43	8	6	41	1.60
602177--602250	17	4.2	17	86	6	87	39	8	10	41	1.70
602177--602250	35	2.1	35	85	9	98	39	8	10	41	1.70
602220--602323	54	2.0	51	85	9	138	40	8	7	43	1.64
602328--602384	27	2.2	27	84	6	73	42	5	5	47	1.48
602303--602386	31	2.8	31	69	23	81	42	3	4	48	1.41
602268--602414	58	2.5	60	76	14	148	42	6	5	45	1.52
602411--602753	179	1.9	181	90	2	557	30	9	8	51	1.65
606630--606705	31	2.5	30	87	10	111	36	10	13	39	1.79
606697--606767	30	2.4	30	92	0	115	35	18	8	38	1.81
615298--615327	15	2.1	14	93	6	51	33	10	0	56	1.32
621556--621603	24	2.0	24	91	0	78	35	31	10	22	1.88
625630--625679	26	2.0	25	92	4	82	54	2	14	30	1.51
626313--626351	20	2.0	20	84	0	51	33	12	23	30	1.92
628329--628380	20	2.6	20	87	0	68	30	17	21	30	1.96
628442--628497	22	2.7	20	81	10	67	32	14	26	26	1.95
628375--628590	95	2.3	96	82	4	240	33	15	22	28	1.94
629655--629703	21	2.3	21	89	0	71	30	18	26	24	1.98
629770--629911	65	2.2	65	85	6	182	28	18	20	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
629922--629959	20	1.9	20	88	0	58	18	13	34	34	1.89
632602--632679	23	3.4	23	75	12	72	26	20	25	26	1.99
638535--638586	19	2.7	19	93	0	86	21	19	26	32	1.97
638967--639175	45	4.6	45	87	1	240	37	9	22	30	1.85
646912--646940	13	2.1	14	93	6	51	41	0	6	51	1.28
648808--648945	43	3.0	47	90	8	239	44	8	13	34	1.74
649871--649927	13	4.3	13	73	8	53	45	5	1	47	1.35
651796--651954	79	2.0	79	86	4	223	41	9	14	34	1.78
652089--652137	20	2.5	20	100	0	98	32	30	4	32	1.77
654576--654613	15	2.5	15	100	0	76	13	26	21	39	1.89
658316--658402	30	2.9	31	81	10	99	44	1	8	45	1.40
658317--658388	28	2.4	31	84	9	87	45	1	8	44	1.42
658780--658888	20	5.3	20	83	1	128	38	24	18	18	1.93
658780--658888	40	2.7	41	92	2	175	38	24	18	18	1.93
658723--658888	20	8.2	20	74	14	126	38	24	18	18	1.93
659212--659262	20	2.5	20	93	0	84	52	19	13	13	1.73
659272--659308	19	1.9	19	88	0	56	48	21	18	10	1.78
659308--659372	19	3.7	19	74	19	77	10	23	21	44	1.83
659330--659386	14	3.7	14	75	20	60	8	24	22	43	1.81
659313--659394	33	2.5	33	97	0	155	9	21	19	48	1.77
661091--661470	94	4.1	94	95	1	656	21	12	18	47	1.81
661558--661641	14	5.6	14	81	13	96	45	23	22	8	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
661558--661660	47	2.2	47	91	0	161	45	25	21	7	1.78
661629--661666	19	2.0	19	100	0	76	47	31	15	5	1.68
661672--661792	19	6.8	19	71	19	100	11	22	20	45	1.83
661694--661750	14	3.7	14	75	20	60	8	24	22	43	1.81
661675--661768	33	2.8	33	98	0	179	10	23	21	44	1.83
662245--662311	21	3.2	21	66	6	55	23	35	20	19	1.95
662218--662311	42	2.2	42	79	7	102	23	35	20	21	1.96
663662--663697	14	2.6	14	95	0	63	33	0	22	44	1.53
663804--663862	19	3.4	18	73	22	63	47	18	20	13	1.82
663804--663883	33	2.4	33	89	0	124	47	21	20	11	1.80
663893--664053	33	4.8	33	79	15	197	13	22	19	44	1.86
663926--663973	19	2.5	19	82	3	60	14	22	22	39	1.91
663965--664039	14	5.0	14	78	15	87	13	22	20	44	1.86
666450--666503	24	2.2	24	93	0	90	40	20	18	20	1.91
666450--666517	24	2.8	24	84	0	64	38	20	17	23	1.93
667346--667454	20	5.5	21	84	6	86	29	20	17	33	1.95
667360--667455	40	2.4	40	86	5	106	29	20	17	32	1.96
667345--667474	59	2.2	60	82	9	151	29	20	17	33	1.95
667378--667533	40	3.9	40	84	7	156	24	19	21	34	1.96
667400--667551	20	7.5	19	80	13	137	23	19	22	34	1.96
667345--667533	60	3.2	60	81	11	176	25	19	20	34	1.96
667422--667551	41	3.2	41	83	1	163	22	19	23	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
667566--667633	20	3.4	20	91	4	102	14	13	22	50	1.77
667683--667736	20	2.7	19	75	8	63	16	18	31	33	1.93
671756--673641	472	4.0	471	99	0	3695	37	20	17	24	1.94
671756--673641	943	2.0	942	99	0	3711	37	20	17	24	1.94
674479--674514	13	2.7	13	86	4	54	83	5	11	0	0.80
702159--702198	21	2.0	20	85	5	53	70	20	0	10	1.16
709811--709848	20	1.9	20	100	0	76	31	21	21	26	1.98
712416--712537	64	1.9	64	84	3	165	35	19	19	25	1.96
716527--716553	13	2.1	13	100	0	54	51	7	33	7	1.58
717184--717347	64	2.6	64	83	5	190	31	20	21	26	1.98
718044--718079	18	2.0	18	94	0	63	16	19	33	30	1.94
728183--728292	24	4.7	24	80	2	125	29	19	18	33	1.95
728192--728283	48	1.9	48	88	0	139	28	19	17	34	1.94
734439--734489	21	2.5	21	81	9	61	29	9	25	35	1.88
735300--735426	24	5.3	24	82	3	150	24	22	22	31	1.98
735300--735428	49	2.7	48	84	4	163	24	21	22	31	1.99
738375--738417	21	2.0	22	86	13	63	60	2	2	34	1.22
739078--739113	14	2.6	14	86	4	56	61	0	0	38	0.96
739437--739476	3	13.0	3	84	5	53	5	35	0	60	1.19
739576--739619	21	2.0	22	87	12	65	50	13	0	36	1.42
739287--739955	196	3.4	195	80	12	722	36	17	2	43	1.61
739287--739971	206	3.4	200	81	9	783	37	17	2	43	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
739950--740014	31	2.3	29	87	12	91	44	6	0	49	1.27
740487--740602	49	2.3	50	85	5	146	24	14	21	39	1.91
740487--740623	51	2.8	50	79	3	125	23	14	20	41	1.89
742760--742827	21	3.2	21	74	0	64	30	32	16	20	1.94
743145--743177	3	11.0	3	93	0	57	30	0	36	33	1.58
758630--758694	21	3.1	20	76	8	67	21	7	4	66	1.36
758630--758694	10	6.2	10	75	8	58	21	7	4	66	1.36
759810--759889	25	3.0	27	79	17	80	46	1	1	51	1.17
765592--765648	19	3.0	19	94	0	105	47	14	31	7	1.70
766907--766957	17	3.1	16	75	11	50	49	1	0	49	1.12

Tables:   1   2   3   4   5   6