genome.fa.s9149.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009149.1 Hibiscus syriacus cultivar Beakdansim tig00112673_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1143513

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 649 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1044990--1045053	23	2.8	23	90	0	101	26	26	28	18	1.98
1045069--1045286	103	2.1	103	95	0	391	37	23	13	26	1.91
1046038--1046258	64	3.5	64	80	6	225	27	18	19	34	1.95
1047874--1047988	55	2.1	55	98	0	221	33	18	23	25	1.97
1048438--1048483	17	2.9	15	81	12	56	17	10	8	63	1.51
1052241--1052352	40	2.7	41	82	8	129	33	14	22	30	1.93
1053613--1054598	249	3.9	250	88	2	1419	31	14	16	36	1.90
1054761--1054808	3	16.3	3	78	4	53	35	0	2	62	1.07
1058510--1058660	37	4.1	37	86	0	185	31	16	19	31	1.94
1060985--1061068	14	6.6	14	66	20	58	15	9	15	59	1.60
1061010--1061034	10	2.5	10	100	0	50	20	12	8	60	1.57
1060994--1061044	24	2.1	24	85	0	66	15	9	15	58	1.62
1061010--1061071	24	2.6	24	78	0	70	17	9	12	59	1.59
1060985--1061068	38	2.2	38	84	0	105	15	9	15	59	1.60
1064408--1064452	23	2.0	23	86	0	63	31	31	8	28	1.88
1067925--1068059	4	30.5	4	75	16	51	42	20	1	36	1.61
1067925--1068033	12	9.0	12	78	18	63	41	20	1	36	1.63
1067950--1067979	6	5.0	6	100	0	60	33	16	0	50	1.46
1070264--1070390	63	2.0	63	98	0	245	29	18	18	33	1.95
1077188--1077278	38	2.3	38	88	5	128	45	1	6	47	1.36
1077258--1077294	2	19.0	2	94	5	67	48	0	0	51	1.00
1077220--1077333	56	2.1	55	86	5	158	46	0	5	47	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1077280--1077445	38	4.4	38	84	7	205	46	1	6	45	1.38
1077188--1077370	96	1.9	95	91	3	298	45	1	6	46	1.36
1077280--1077446	74	2.2	76	87	6	234	46	1	5	46	1.38
1077427--1077456	2	15.0	2	100	0	60	50	0	0	50	1.00
1077489--1077541	12	4.6	11	88	11	72	18	1	0	79	0.83
1077472--1077531	28	2.1	28	81	6	68	23	1	3	71	1.10
1077481--1077534	28	2.0	27	88	3	81	20	1	0	77	0.86
1077489--1077542	6	9.3	6	82	11	60	18	1	0	79	0.82
1077482--1077534	5	9.8	5	80	15	61	20	1	0	77	0.87
1078662--1078700	5	7.4	5	83	11	51	20	5	0	74	1.01
1085322--1085353	15	2.1	15	94	0	55	12	15	21	50	1.77
1090047--1090138	20	4.6	20	94	0	148	25	27	23	23	2.00
1093869--1093904	14	2.6	14	100	0	72	30	22	13	33	1.93
1113180--1113235	21	3.0	20	78	19	66	78	7	1	12	1.02
1113581--1113620	15	2.7	15	88	0	53	62	0	7	30	1.23
1113611--1113811	12	16.6	12	67	21	66	74	1	2	20	1.05
1113611--1113693	27	3.2	26	80	9	91	75	1	2	20	0.98
1113678--1113742	33	1.9	33	87	9	96	70	4	0	24	1.06
1113608--1113800	70	2.8	69	74	18	170	74	2	2	20	1.04
1113721--1113786	27	2.4	26	75	22	64	74	1	4	19	1.07
1113611--1113754	34	4.4	33	72	16	90	73	2	2	21	1.06
1113612--1113794	34	6.2	27	63	28	63	74	2	2	20	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1114975--1115011	2	18.5	2	94	0	65	45	0	2	51	1.15
1115561--1141143	84	307.7	84	81	3	27885	24	18	22	35	1.96
1140963--1141353	209	1.9	209	87	8	580	22	16	23	37	1.93
1141163--1143513	319	7.3	323	77	13	1983	23	18	23	35	1.96
1141163--1143513	80	29.2	84	74	14	1782	23	18	23	35	1.96

Tables:   1   2   3   4   5   6

The End!