genome.fa.s9234.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009234.1 Hibiscus syriacus cultivar Beakdansim tig00112856_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  912649

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 489 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
285943--286173	38	6.2	37	74	16	162	44	6	3	45	1.49
289915--289953	20	2.0	20	85	10	53	53	0	35	10	1.35
299784--299808	2	12.5	2	100	0	50	52	0	0	48	1.00
307177--307219	18	2.4	18	92	7	70	76	11	11	0	1.02
308395--308425	12	2.6	12	94	0	53	48	29	0	22	1.51
308949--309083	35	3.9	34	82	4	139	32	15	11	40	1.84
308984--309098	35	3.6	32	85	9	137	28	16	13	41	1.86
309053--309132	27	2.9	26	88	9	106	23	8	15	52	1.70
309168--309225	30	2.0	30	86	3	82	31	13	12	43	1.81
309079--309273	91	2.2	90	85	4	259	28	12	14	44	1.82
309511--309852	134	2.6	134	87	0	470	24	30	19	26	1.98
310067--310103	3	12.3	3	100	0	74	35	0	0	64	0.94
312909--312949	12	3.6	12	77	12	50	24	0	0	75	0.80
313152--313184	16	2.1	16	88	5	50	48	0	0	51	1.00
319052--319101	25	2.0	25	92	0	82	44	12	12	32	1.78
322507--322551	20	2.3	20	84	3	56	48	8	4	37	1.55
322510--322549	20	2.0	20	90	0	62	45	10	5	40	1.60
322563--322602	20	2.0	21	90	5	64	45	15	5	35	1.68
322616--322654	20	2.0	20	94	0	69	41	17	5	35	1.72
322508--322655	52	2.8	52	94	3	262	47	12	5	33	1.65
327213--327257	20	2.3	20	84	3	56	48	8	4	37	1.55
327216--327255	20	2.0	20	90	0	62	45	10	5	40	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327269--327308	20	2.0	21	90	5	64	45	15	5	35	1.68
327322--327360	20	2.0	20	94	0	69	41	17	5	35	1.72
327214--327361	52	2.8	52	94	3	262	47	12	5	33	1.65
329961--330019	29	2.0	29	100	0	118	30	11	27	30	1.92
330037--330076	20	1.9	21	90	10	64	25	10	5	60	1.49
335695--335729	17	2.1	17	100	0	70	22	14	5	57	1.59
336141--336195	28	2.0	28	85	0	74	41	7	12	38	1.71
343482--343532	27	1.9	26	84	4	66	13	17	43	25	1.86
343458--343539	26	3.1	26	71	13	69	17	18	40	24	1.91
343765--343806	15	2.7	16	74	7	50	54	0	2	42	1.13
344194--344243	26	1.9	26	87	0	73	52	0	4	44	1.20
344564--344600	15	2.4	16	90	4	58	48	0	2	48	1.15
346772--347385	233	2.6	233	88	2	847	32	14	17	34	1.91
347647--347934	134	2.2	133	84	2	382	32	21	15	30	1.94
348591--348645	15	3.0	20	70	25	66	30	16	14	38	1.89
348679--348753	21	3.5	21	85	3	96	30	13	12	44	1.80
348743--348807	20	3.2	20	80	0	85	43	15	3	38	1.62
348948--349364	134	3.1	132	80	7	486	33	20	16	29	1.94
353976--354002	2	13.5	2	100	0	54	48	0	0	51	1.00
356316--356662	177	2.0	177	81	4	414	40	12	11	35	1.80
360696--360720	2	12.5	2	100	0	50	52	0	0	48	1.00
370438--370592	59	2.6	60	79	11	156	43	3	20	32	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373839--373983	70	2.1	70	97	0	272	35	15	16	31	1.91
379384--379439	21	2.6	21	83	8	69	28	14	28	28	1.95
384033--384125	21	4.6	20	78	4	96	38	18	24	18	1.92
384030--384125	41	2.3	41	98	0	183	39	17	23	18	1.92
384033--384125	20	4.6	20	78	4	96	38	18	24	18	1.92
384114--384208	20	4.7	20	80	2	82	35	23	17	23	1.95
384703--384740	20	1.9	20	88	0	58	13	15	21	50	1.78
386059--386103	18	2.5	18	85	0	63	26	42	15	15	1.87
386570--386636	20	3.4	20	81	2	73	38	23	22	14	1.92
386625--386682	14	3.9	14	79	16	71	48	25	17	8	1.75
386609--386699	32	2.8	33	94	3	166	47	23	18	10	1.80
386570--386704	19	7.6	19	71	19	85	42	23	20	12	1.86
386716--386773	14	3.9	14	79	16	71	8	17	25	48	1.75
386711--386810	19	5.9	18	73	19	99	10	19	25	46	1.80
386711--386789	32	2.4	33	97	2	151	8	18	25	46	1.78
388870--388920	20	2.5	20	90	0	75	21	23	21	33	1.97
389286--389321	14	2.6	14	90	0	54	30	0	22	47	1.52
389428--389481	14	3.5	14	77	22	63	48	20	20	11	1.80
389409--389486	33	2.4	33	91	0	120	42	21	23	12	1.87
389493--389548	20	2.8	20	94	0	94	17	23	23	35	1.95
388426--390319	628	3.1	609	93	4	3237	31	12	19	36	1.89
389914--389949	14	2.6	14	90	0	54	30	0	22	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391188--391246	24	2.5	24	82	0	73	28	16	18	35	1.93
391421--391445	12	2.1	12	100	0	50	72	0	28	0	0.86
393742--393839	19	5.7	19	69	22	90	43	19	24	12	1.85
393742--393835	33	2.8	33	98	0	179	43	19	24	12	1.85
393845--393999	20	7.8	20	100	0	310	9	20	20	49	1.76
393983--394016	14	2.4	14	85	0	50	8	23	20	47	1.78
394138--394174	14	2.6	14	91	0	65	45	24	0	29	1.53
395529--395595	21	3.2	21	68	4	55	19	20	35	23	1.95
395529--395651	42	2.9	41	80	7	113	22	17	36	22	1.95
397653--397837	19	10.1	19	74	14	156	43	22	21	12	1.86
397653--397837	33	5.1	38	80	10	156	43	22	21	12	1.86
397833--397878	20	2.4	19	85	7	65	10	15	26	47	1.78
398433--398526	20	4.7	20	77	2	80	23	17	24	35	1.95
398515--398610	41	2.3	41	98	0	147	18	23	17	39	1.92
398515--398607	20	4.6	20	78	4	96	18	24	18	38	1.92
401917--401963	2	23.5	2	100	0	94	51	0	0	48	1.00
402338--402406	28	2.5	28	97	0	129	42	23	23	11	1.86
403552--403627	36	2.1	36	83	9	93	34	17	26	22	1.96
404632--404752	30	4.0	30	75	0	125	35	14	22	27	1.93
405363--405401	20	2.0	20	85	10	53	38	20	20	20	1.94
411648--411728	39	2.1	38	86	6	110	39	39	7	13	1.73
414835--414903	33	2.1	34	88	2	104	26	5	23	44	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416996--417137	32	4.4	32	78	9	128	26	27	28	17	1.98
418622--418677	21	2.7	20	74	17	51	25	12	19	42	1.86
423632--423702	29	2.4	29	83	9	90	46	4	16	32	1.67
427228--427262	12	2.9	12	95	0	61	5	5	25	62	1.40
427219--427249	15	2.1	15	93	0	53	6	3	25	64	1.33
431569--431640	3	23.7	3	94	2	126	34	1	0	63	1.03
432060--432097	13	3.2	12	89	10	60	81	2	15	0	0.80
432760--432820	29	2.0	30	84	9	79	40	11	4	42	1.62
444436--444495	10	6.1	9	80	19	59	85	0	13	1	0.69
444436--444495	11	5.3	11	80	13	68	85	0	13	1	0.69
444436--444495	21	3.0	20	83	7	70	85	0	13	1	0.69
445632--446292	83	8.0	83	97	1	1240	28	14	21	35	1.93
445632--446292	165	4.0	166	97	1	1240	28	14	21	35	1.93
445632--446292	248	2.7	248	97	0	1245	28	14	21	35	1.93
447095--447788	112	6.0	113	82	9	823	39	13	18	28	1.89
447457--447849	124	3.3	122	80	11	540	40	13	18	27	1.88
447114--447849	236	3.1	236	90	5	1072	39	13	19	27	1.89
448092--448159	3	22.7	3	91	5	111	35	1	0	63	1.04
452387--452434	24	2.0	24	95	0	87	27	20	16	35	1.94
453021--453047	2	13.5	2	100	0	54	48	0	0	51	1.00
456560--456609	15	3.4	15	88	5	75	10	68	16	6	1.38
456548--456609	14	4.5	14	76	17	67	9	67	16	6	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
456546--456607	25	2.4	25	84	12	74	11	66	16	6	1.43
459133--459201	2	35.5	2	94	5	124	49	0	0	50	1.00
463889--464732	168	5.0	168	90	0	1294	22	28	13	35	1.92
467519--467551	2	16.5	2	100	0	66	48	0	51	0	1.00
468762--469397	222	2.8	221	86	8	848	24	12	26	36	1.91
469860--469901	22	1.9	22	90	0	66	42	28	9	19	1.82
481181--481225	2	22.5	2	81	0	54	51	8	40	0	1.33
484697--484742	22	2.1	22	88	4	67	32	10	6	50	1.63
485684--485752	31	2.2	31	86	0	102	36	4	4	55	1.40
488572--488654	23	3.6	23	78	12	80	45	20	22	10	1.82

Tables:   1   2   3   4   5