genome.fa.s9238.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009238.1 Hibiscus syriacus cultivar Beakdansim tig00112864_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1094141

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 547 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
296103--296237	20	6.7	20	83	5	128	25	19	25	30	1.98
296128--296257	41	3.2	40	78	5	136	24	20	25	30	1.99
296267--296319	21	2.5	22	78	6	65	35	18	24	20	1.95
300067--300093	2	13.5	2	100	0	54	51	0	0	48	1.00
330133--330184	26	2.0	26	100	0	104	26	7	42	23	1.81
330820--330853	17	2.0	17	88	11	52	41	0	0	58	0.98
332257--332281	10	2.5	10	100	0	50	52	28	0	20	1.47
333541--333578	20	2.0	20	89	5	60	23	15	21	39	1.92
339701--339773	2	36.5	2	97	0	137	49	0	0	50	1.00
344268--344322	29	1.9	29	82	10	69	49	7	9	34	1.62
345431--345471	3	13.7	3	85	10	57	63	0	2	34	1.08
345700--346615	116	8.0	116	94	1	1505	31	20	12	36	1.89
347016--347095	22	3.6	22	72	0	79	40	12	12	35	1.81
347458--347663	54	3.9	53	83	7	231	26	22	15	35	1.94
347462--347663	104	1.9	104	84	2	271	26	22	15	35	1.94
349670--349896	115	2.0	114	89	0	346	30	20	15	33	1.94
352155--352188	12	2.8	12	86	4	50	0	14	0	85	0.60
352155--352184	11	2.7	11	89	0	51	0	13	0	86	0.57
352150--352189	18	2.2	18	86	8	55	0	20	0	80	0.72
355463--355516	14	3.8	14	85	2	63	51	9	14	24	1.71
357806--357845	14	3.1	13	82	10	55	60	0	0	40	0.97
357819--357863	17	2.6	17	85	3	54	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
358116--358170	29	1.9	29	82	10	69	49	7	9	34	1.62
359279--359322	3	14.7	3	86	9	63	63	0	2	34	1.07
360434--360501	25	2.4	31	76	23	85	52	2	7	36	1.44
360732--360794	33	1.9	33	93	0	108	44	3	19	33	1.66
366141--366205	33	1.9	34	90	3	105	30	13	21	33	1.92
369808--369921	57	1.9	58	84	5	149	39	28	12	20	1.88
369800--369932	60	2.2	60	82	0	167	43	24	14	18	1.86
370191--370221	4	8.0	4	92	7	55	51	0	48	0	1.00
370188--370238	11	4.7	11	79	15	54	56	0	43	0	0.99
370188--370238	15	3.5	15	89	5	79	56	0	43	0	0.99
370716--370747	16	1.9	16	93	6	55	40	3	6	50	1.43
374500--374630	65	2.0	65	95	0	235	27	14	25	32	1.94
375850--375925	29	2.6	29	87	2	89	27	28	13	30	1.94
375937--376065	51	2.5	51	87	2	170	16	33	31	19	1.94
379711--379805	50	1.9	50	80	6	113	66	5	5	23	1.33
382072--382112	10	4.1	10	84	12	57	39	0	29	31	1.57
382313--382388	29	2.6	30	91	2	118	31	9	28	30	1.88
383174--383202	15	1.9	15	100	0	58	62	3	0	34	1.12
383381--383422	2	21.0	2	100	0	84	50	0	0	50	1.00
394976--395057	29	2.8	29	94	1	137	32	14	9	42	1.79
399432--399513	29	2.8	29	94	1	137	32	14	9	42	1.79
408153--408221	31	2.2	31	86	0	93	42	14	10	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
408640--408722	26	3.2	26	98	0	157	27	4	14	53	1.61
410515--410591	37	2.1	36	83	9	93	46	1	3	48	1.28
421646--421727	29	2.8	29	94	1	137	32	14	9	42	1.79
423015--423044	15	2.0	15	93	0	51	56	23	0	20	1.42
426413--426494	29	2.8	29	94	1	137	32	14	9	42	1.79
434265--434308	16	2.7	17	86	10	65	20	4	29	45	1.71
434384--434910	83	6.4	81	79	7	397	35	18	16	29	1.92
434400--434863	166	2.8	165	78	7	460	35	18	16	29	1.93
434392--434859	249	1.9	249	84	2	627	34	19	16	29	1.93
435711--435835	31	4.0	31	94	2	207	37	23	19	20	1.94
440402--440482	31	2.6	31	92	0	126	39	24	17	18	1.92
442749--442799	26	1.9	27	84	4	68	52	17	3	25	1.61
444742--444783	13	3.2	13	83	16	52	69	2	0	28	1.01
448166--448315	78	1.9	78	98	0	291	33	16	2	48	1.60
448549--448642	36	2.6	36	93	0	152	32	10	40	15	1.82
448720--448829	2	58.5	2	69	15	65	49	0	0	50	1.07
451203--451254	28	2.0	27	82	14	65	36	3	11	48	1.58
461083--461119	19	1.9	19	100	0	74	32	27	16	24	1.96
461192--461247	21	2.7	21	91	0	94	25	21	25	28	1.99
461255--461302	21	2.3	21	88	0	69	25	25	20	29	1.99
461252--461478	42	5.5	42	74	10	178	24	23	20	32	1.98
461210--461384	82	2.1	82	92	0	296	24	22	22	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
461334--461485	21	7.3	21	87	2	173	23	23	20	32	1.98
461210--461404	82	2.4	81	88	3	257	24	23	22	29	1.99
461252--461478	63	3.6	63	76	9	214	24	23	20	32	1.98
461635--461686	16	3.1	17	78	13	63	59	3	0	36	1.16
462133--462264	21	6.4	21	86	2	187	30	15	25	28	1.96
462133--462264	62	2.1	62	92	0	219	30	15	25	28	1.96
462133--462264	41	3.2	41	83	3	176	30	15	25	28	1.96
462294--462346	21	2.5	21	90	0	79	28	22	26	22	1.99
462291--462447	61	2.6	61	91	6	232	28	22	25	23	2.00
462352--462465	21	5.5	21	74	15	112	28	23	24	23	2.00
462212--462407	82	2.4	82	92	0	329	29	21	24	25	1.99
462212--462465	82	3.1	80	84	5	233	28	21	24	25	1.99
462315--462447	61	2.2	61	98	0	239	27	23	24	24	2.00
462460--462512	20	2.7	20	96	0	97	28	15	24	32	1.95
462558--462594	19	1.9	19	88	0	56	24	16	27	32	1.96
468444--468969	262	2.0	264	99	0	1038	32	19	15	32	1.93
469984--470042	21	2.8	21	89	0	91	22	40	28	8	1.83
474829--474884	11	4.8	11	76	20	60	35	1	3	58	1.26
474838--474894	24	2.2	27	84	9	75	35	1	3	59	1.25
483859--483934	20	3.8	21	70	19	56	50	0	1	48	1.09
485165--485201	17	2.2	17	90	0	56	48	0	5	45	1.25
485082--485336	127	2.0	127	98	1	494	44	10	13	31	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
485292--485328	17	2.2	17	90	0	56	48	0	5	45	1.25
486525--486664	23	6.1	23	84	0	172	35	23	24	16	1.95
486525--486664	69	2.0	69	85	0	190	35	23	24	16	1.95
488540--488749	65	3.2	65	79	11	234	25	18	24	30	1.98
489104--489152	16	3.1	16	72	0	53	24	38	0	36	1.56
493778--493807	15	2.0	15	93	0	51	50	23	0	26	1.50
495183--495354	23	7.3	23	74	3	146	30	23	22	24	1.99
495188--495354	47	3.6	47	93	0	282	29	23	22	23	1.99
495361--495578	103	2.1	103	95	1	393	37	22	12	26	1.91
496254--496294	22	1.9	22	85	5	57	7	24	36	31	1.83
497099--497167	23	3.0	23	82	0	75	27	24	24	23	2.00
497186--497400	103	2.1	102	93	1	367	37	23	12	26	1.90
498187--498348	64	2.5	63	76	8	157	25	20	20	32	1.98
502967--503044	23	3.3	23	81	1	93	32	23	20	24	1.98
503051--503268	103	2.1	103	95	1	393	37	23	13	26	1.91
507471--507630	65	2.5	65	87	5	218	26	19	24	30	1.98
507471--507672	65	3.1	63	80	11	214	26	18	24	30	1.98
513360--513469	6	18.7	6	94	3	197	33	0	16	50	1.46
529127--529334	75	2.8	75	87	2	274	23	31	23	21	1.98
532378--532418	2	20.5	2	94	0	73	53	0	46	0	1.00
535214--535772	281	2.0	281	91	1	906	34	15	16	33	1.91
537575--537609	18	2.0	17	88	5	52	51	25	0	22	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
539964--540015	16	3.2	16	97	2	95	44	19	0	36	1.51
540704--540744	15	2.6	16	79	20	50	9	39	14	36	1.79
540947--541023	33	2.3	33	97	0	145	12	31	23	32	1.92
541525--541557	17	1.9	17	100	0	66	24	36	18	21	1.95
541528--541567	17	2.4	17	86	0	53	27	37	12	22	1.90
542430--542463	16	2.1	17	88	5	52	44	20	0	35	1.52
543845--543888	21	2.1	21	86	0	61	29	27	27	15	1.96
544647--544770	31	4.0	31	77	11	119	30	18	20	30	1.96
544758--544829	30	2.4	30	92	0	117	23	20	25	30	1.99
549100--549143	21	2.1	21	86	0	61	29	27	27	15	1.96

Tables:   1   2   3   4   5