Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009238.1 Hibiscus syriacus cultivar Beakdansim tig00112864_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1094141

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 547 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
893232--893287
29
1.9
29
96
0
103
19
30
37
12
1.89
893346--893431
29
3.0
29
94
3
147
20
31
33
13
1.92
894046--894093
24
2.1
22
84
7
60
64
0
2
33
1.05
902104--902172
22
3.1
22
95
0
120
17
40
24
17
1.90
912165--912803
212
3.0
212
99
0
1260
30
26
17
26
1.97
927724--927779
24
2.2
26
84
9
80
19
7
14
58
1.58
939235--939284
20
2.5
20
93
0
82
36
14
22
28
1.92
945197--945249
26
2.0
26
82
7
63
56
11
13
18
1.66
950277--950305
14
2.0
15
93
6
51
27
20
20
31
1.98
955678--956006
55
6.0
55
91
4
529
29
26
18
25
1.98
955678--956006
111
3.0
110
93
2
563
29
26
18
25
1.98
955678--956208
166
3.3
162
84
8
608
28
27
17
27
1.97
955678--956223
51
10.3
52
88
6
474
28
27
16
27
1.97
957569--957684
17
6.6
17
69
23
66
6
20
0
71
1.14
957578--957717
8
15.9
9
66
18
53
5
20
0
73
1.06
957569--957723
23
6.9
23
70
21
89
5
20
0
73
1.08
957568--957709
41
3.5
39
70
17
103
5
20
0
73
1.08
957614--957715
13
7.6
14
69
19
58
3
21
0
73
1.05
957670--957723
11
4.7
11
90
6
81
3
16
0
79
0.87
972944--972988
22
2.0
22
100
0
90
44
22
8
24
1.81
982430--982485
23
2.4
24
81
6
69
53
14
7
25
1.66
983221--983265
17
2.5
19
85
7
67
44
8
11
35
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
983916--984028
23
4.8
24
75
4
86
57
19
11
11
1.64
983916--984028
47
2.4
47
77
0
118
57
19
11
11
1.64
988145--988208
18
3.6
18
86
0
74
39
15
25
20
1.92
988371--988443
36
2.0
36
84
5
94
50
4
1
43
1.29
994340--994501
64
2.5
64
78
7
168
31
20
21
26
1.98
995166--995383
103
2.1
103
91
0
355
25
13
23
37
1.92
995857--996192
167
2.0
167
98
0
654
31
13
22
33
1.93
998612--998711
14
7.3
14
64
23
52
47
1
0
52
1.07
998617--998711
41
2.3
41
87
3
138
48
1
0
50
1.07
998744--998820
2
39.5
2
88
5
113
50
1
0
48
1.09
1010539--1010564
12
2.2
12
100
0
52
0
57
0
42
0.98
1017615--1017641
3
9.0
3
100
0
54
33
0
0
66
0.92
1017636--1017688
21
2.5
22
84
9
65
13
5
5
75
1.16
1017633--1017694
22
2.7
24
82
14
85
12
6
4
75
1.15
1018946--1018987
17
2.4
17
84
11
50
9
16
2
71
1.23
1021566--1021761
100
2.0
99
92
1
329
32
16
18
32
1.94
1022363--1022972
84
7.3
84
82
4
576
34
23
18
23
1.96
1022393--1022978
167
3.5
166
81
3
588
33
24
18
23
1.96
1024675--1024713
10
3.9
10
89
0
60
23
2
0
74
0.94
1024727--1024790
23
2.7
22
81
15
67
20
4
1
73
1.09
1024750--1024907
5
31.0
5
68
15
74
17
5
4
72
1.22
1024919--1024960
16
2.6
17
82
14
54
23
2
2
71
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1026084--1026126
18
2.4
18
96
3
79
46
0
13
39
1.44
1033489--1033546
25
2.3
25
100
0
116
17
15
36
31
1.91
1036327--1036368
21
2.0
21
100
0
84
52
14
19
14
1.75
1045034--1045083
19
2.5
20
80
3
66
72
4
6
18
1.22
1050547--1050586
17
2.2
20
86
13
59
25
0
2
72
0.97
1053603--1053660
30
2.0
29
86
3
80
34
5
1
58
1.30
1053656--1053698
21
2.0
20
82
8
50
23
2
4
69
1.18
1056952--1056983
15
2.1
15
94
0
55
25
18
9
46
1.79
1064289--1064351
17
3.3
19
74
12
67
84
3
11
1
0.81
1064284--1064353
11
6.4
11
76
12
72
82
2
12
1
0.84
1064706--1064754
19
2.8
17
81
9
55
36
10
6
46
1.63
1065048--1065501
115
4.0
115
95
0
784
34
14
20
31
1.93
1066469--1066891
116
3.7
110
82
10
395
39
13
19
27
1.90
1066470--1066734
115
2.3
116
84
7
364
38
13
20
27
1.90
1066687--1066980
124
2.4
124
84
6
361
42
15
18
23
1.88
1067129--1067185
3
18.3
3
89
7
71
38
0
0
61
0.96
1071365--1071399
16
2.2
16
89
0
52
28
14
25
31
1.95
1076097--1076162
29
2.2
30
84
10
82
42
9
7
40
1.65
1078139--1078174
4
9.0
4
93
0
54
30
0
19
50
1.48
1080538--1080600
2
31.5
2
100
0
126
50
0
0
49
1.00
1081417--1081468
21
2.7
19
75
13
52
44
5
0
50
1.26
1083545--1083616
37
1.9
37
88
5
110
38
19
9
31
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1093705--1093753
22
2.2
23
96
3
91
59
6
16
18
1.57

Tables:   1   2   3   4   5

The End!