genome.fa.s9247.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009247.1 Hibiscus syriacus cultivar Beakdansim tig00112888_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1479039

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 948 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
236858--237129	110	2.5	111	90	3	422	36	12	19	32	1.88
237343--237529	67	2.8	67	84	1	248	34	14	21	29	1.93
237540--238339	81	9.9	81	86	1	1050	33	12	23	30	1.92
238382--238597	45	4.8	45	84	2	290	49	6	19	24	1.73
238534--238572	19	2.1	19	85	9	53	58	2	17	20	1.50
238382--238643	135	1.9	135	80	6	296	48	7	19	24	1.74
239212--239319	46	2.3	46	88	3	164	21	20	12	45	1.84
240993--241082	44	2.0	44	95	0	162	34	16	16	32	1.92
242065--242157	20	4.6	20	82	7	125	10	24	24	39	1.87
242043--242137	41	2.3	41	92	3	156	15	22	25	36	1.93
242065--242185	61	2.0	62	95	1	217	12	23	23	39	1.89
242280--242382	6	17.2	6	98	0	197	33	49	15	0	1.51
242874--242912	6	6.5	6	100	0	78	0	15	51	33	1.44
242992--243105	20	5.6	20	74	8	113	37	23	22	15	1.93
243012--243127	21	5.6	21	67	15	80	36	25	21	17	1.95
242987--243130	41	3.5	40	90	2	225	37	22	21	18	1.94
243170--243272	41	2.5	41	93	0	170	37	26	19	16	1.92
242988--243276	20	14.1	21	65	12	109	36	23	21	19	1.95
243030--243299	142	1.9	142	91	1	443	35	22	21	20	1.96
261492--261518	2	13.5	2	100	0	54	48	0	0	51	1.00
277859--277924	21	3.2	20	76	18	62	75	3	15	6	1.11
277980--278117	69	2.0	69	89	0	213	37	23	15	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
279048--279161	32	3.5	33	78	9	117	30	13	18	37	1.89
280360--280409	24	2.1	24	85	7	66	24	2	14	60	1.45
287246--287289	21	2.1	22	87	8	65	13	15	0	70	1.17
291634--291936	106	2.9	106	88	0	435	34	23	17	24	1.96
292166--292343	87	2.1	87	92	1	295	33	18	11	36	1.87
292253--292491	102	2.4	102	87	2	338	32	19	11	36	1.87
292532--292743	36	6.0	36	76	14	192	27	20	12	39	1.89
292542--292728	102	1.8	102	84	6	254	28	19	12	39	1.88
292649--292743	37	2.6	36	82	8	120	25	18	13	42	1.87
292737--292822	39	2.3	35	88	7	118	45	23	5	25	1.75
292835--292979	78	1.8	79	85	4	204	33	23	17	25	1.97
293947--293997	25	2.2	24	82	10	61	27	0	5	66	1.14
294031--294204	7	24.9	7	77	14	155	18	1	0	79	0.82
294034--294204	13	12.8	13	80	10	152	18	1	0	79	0.82
294005--294090	38	2.3	36	82	13	102	27	3	1	67	1.14
294082--294290	14	14.5	14	73	19	73	17	4	0	77	0.99
294112--294204	1	93.0	1	73	0	69	12	1	0	86	0.64
301022--301055	15	2.3	15	89	0	50	35	32	17	14	1.91
301140--301220	29	2.8	29	94	3	137	17	20	16	45	1.85
301610--301714	45	2.3	45	83	6	124	31	12	19	37	1.88
301699--301746	19	2.5	19	100	0	96	20	29	22	27	1.99
301784--301839	21	2.7	21	94	0	94	28	23	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311087--311134	25	1.9	25	83	8	62	56	0	22	20	1.43
313212--313313	34	3.1	34	70	18	108	31	19	9	39	1.84
316007--320021	400	10.0	400	98	0	7724	41	14	8	35	1.76
320597--320655	19	3.1	19	76	9	66	49	0	0	50	1.00
320583--320662	38	2.2	36	90	4	124	50	0	0	50	1.00
320586--320662	32	2.3	34	82	12	90	50	0	0	49	1.00
320581--320662	13	5.9	15	70	18	54	48	0	0	51	1.00
321056--321097	2	21.5	2	95	4	77	52	0	0	47	1.00
330160--330232	32	2.3	32	85	0	101	38	27	13	20	1.90
331605--331631	2	13.5	2	100	0	54	48	0	0	51	1.00
334377--334421	20	2.2	20	100	0	90	35	35	8	20	1.84
340007--340051	15	3.0	14	84	12	54	28	0	2	68	1.01
341250--341315	34	1.9	34	81	6	80	22	21	27	28	1.99
346984--347023	21	1.9	21	89	0	62	57	2	0	40	1.12
348921--348954	13	2.8	13	91	8	54	88	11	0	0	0.52
354269--354363	6	15.8	6	100	0	190	50	15	0	33	1.45
362286--362324	19	2.2	18	86	9	53	64	2	0	33	1.08
363216--363279	5	12.8	5	79	15	62	79	1	1	17	0.89
363215--363279	19	3.6	18	85	8	87	80	1	1	16	0.88
363215--363281	13	5.4	12	76	16	66	80	1	1	16	0.86
363215--363280	6	10.8	6	74	20	57	80	1	1	16	0.87
363215--363279	18	3.6	17	84	15	78	80	1	1	16	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
363360--363392	13	2.5	13	90	0	57	84	9	6	0	0.76
365822--365862	21	1.9	21	85	5	55	24	17	14	43	1.86
366459--366519	10	6.4	9	78	12	52	1	18	1	78	0.91
366469--366516	19	2.6	18	77	9	51	2	18	2	77	0.97
368648--368701	20	2.7	19	76	18	65	33	27	18	20	1.96
368730--368779	20	2.5	20	90	6	75	44	24	18	14	1.86
368791--368881	20	4.5	20	84	1	110	36	24	19	19	1.95
368791--368880	40	2.2	41	88	2	128	36	23	20	20	1.95
369101--369154	27	2.0	27	82	3	65	35	31	11	22	1.89
369459--369518	21	2.9	21	80	7	70	48	21	20	10	1.78
369487--369577	33	2.7	33	84	3	119	46	21	20	10	1.82
369580--369706	33	3.8	33	88	1	182	12	20	22	44	1.84
369630--369681	14	3.4	14	72	23	50	7	25	23	44	1.79
369644--369734	20	4.9	20	70	17	63	13	23	18	45	1.84
373174--373209	14	2.6	14	95	0	63	33	0	22	44	1.53
373316--373395	33	2.4	33	89	0	115	46	20	20	13	1.84
373405--373603	33	5.8	33	87	6	299	13	24	18	43	1.86
373403--373628	105	2.2	105	98	0	434	13	24	19	42	1.87
373407--373603	72	2.9	67	86	8	299	13	23	18	44	1.86
373496--373692	86	2.3	87	85	2	290	14	23	20	41	1.90
373403--373628	72	3.2	67	82	11	285	13	24	19	42	1.87
373615--373642	14	2.0	14	100	0	56	14	21	21	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373597--373690	33	2.8	34	81	3	118	14	22	22	40	1.90
373663--373736	20	3.7	20	66	16	53	22	17	27	32	1.97
375981--376007	14	1.9	14	100	0	54	7	11	29	51	1.64
376207--376260	24	2.2	24	93	0	90	40	20	18	20	1.91
376207--376274	24	2.8	24	84	0	64	38	20	17	23	1.93
377114--377333	20	10.9	19	69	15	88	20	17	23	37	1.94
377161--377310	61	2.5	60	87	2	185	19	17	24	38	1.92
377117--377250	40	3.3	40	84	4	162	19	17	22	40	1.92
377160--377310	41	3.7	40	81	9	146	19	17	24	38	1.93
377199--377333	61	2.2	61	84	5	166	20	17	25	35	1.95
377200--377332	41	3.3	41	81	7	130	20	18	26	35	1.95
377319--377371	20	2.7	20	86	13	74	13	16	24	45	1.83
377421--377474	20	2.7	19	75	8	63	16	18	31	33	1.93
379181--379220	15	2.8	14	77	7	53	75	2	7	15	1.14
386282--386372	8	10.6	8	77	13	58	74	3	2	19	1.06
386284--386358	4	19.0	4	78	10	75	73	4	0	22	1.00
386315--386356	9	4.7	9	86	13	52	71	0	0	28	0.86
388978--389013	2	18.5	2	94	5	65	47	0	0	52	1.00
389194--389243	18	2.8	18	82	8	59	16	4	4	76	1.10
391718--392512	397	2.0	398	88	2	1186	40	13	24	21	1.90
392976--393017	22	2.0	22	90	4	68	11	11	4	71	1.29
396885--396947	25	2.4	27	75	22	62	47	6	1	44	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
396885--396947	27	2.4	25	77	17	65	47	6	1	44	1.38
398313--398403	3	30.7	3	77	10	62	25	6	2	65	1.28
400893--400950	20	2.8	20	89	7	82	17	22	24	36	1.95
400989--401042	20	2.6	20	85	5	72	33	20	16	29	1.95
401079--401130	21	2.5	21	100	0	104	28	15	21	34	1.94
401119--401169	19	2.6	20	79	14	61	27	27	15	29	1.96
409878--409915	6	6.5	6	93	6	69	13	0	34	52	1.40
413284--413317	4	8.8	4	93	6	61	76	0	0	23	0.79
418699--418738	20	2.0	20	95	0	71	42	15	7	35	1.75
419467--419518	24	2.2	24	83	10	63	65	5	0	28	1.16

Tables:   1   2   3   4   5   6   7   8