genome.fa.s9247.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009247.1 Hibiscus syriacus cultivar Beakdansim tig00112888_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1479039

Tables:   1   2   3   4   5   6   7   8   

This is table  4  of  8  ( 948 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
615950--616032	21	4.0	21	70	6	69	25	15	24	34	1.95
625155--625201	21	2.2	21	80	0	58	21	27	14	36	1.93
625197--625328	20	6.6	20	76	8	142	37	25	18	18	1.93
625197--625328	40	3.3	40	86	5	194	37	25	18	18	1.93
625885--625954	20	3.5	19	84	5	86	51	18	17	12	1.76
625940--626019	33	2.5	32	88	6	117	46	20	20	13	1.84
626014--626151	52	2.6	52	89	2	195	12	23	21	42	1.86
626014--626159	19	8.1	19	74	17	123	12	23	20	43	1.85
627855--628422	94	6.1	94	96	0	1014	20	12	19	47	1.82
628470--628579	19	5.8	20	79	8	113	44	24	18	12	1.84
628488--628558	36	1.9	37	88	2	108	45	21	21	12	1.84
628586--628689	40	2.9	36	79	13	106	15	20	22	42	1.89
628622--628688	20	3.3	20	93	0	116	17	17	22	41	1.90
629197--629279	42	2.0	42	83	9	107	21	39	19	19	1.92
630769--630864	33	2.8	33	87	3	129	41	19	23	14	1.89
630802--630869	19	3.8	19	72	21	74	45	17	22	14	1.85
631624--631671	20	2.4	20	89	6	71	16	20	25	37	1.93
631668--631713	21	2.2	21	88	0	65	41	17	23	17	1.90
633568--633599	14	2.3	14	94	0	55	40	0	3	56	1.15
645632--646023	160	2.5	160	90	0	615	39	20	17	22	1.92
650996--651029	2	17.0	2	100	0	68	0	0	50	50	1.00
651968--652022	18	3.1	18	91	0	83	23	20	29	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
656766--656849	24	3.5	24	75	3	80	59	16	11	11	1.61
656800--656888	10	8.3	10	70	14	52	62	14	8	13	1.53
656803--656883	23	3.7	23	75	9	69	62	13	9	13	1.53
656795--656887	33	2.8	32	78	10	91	63	12	9	13	1.52
665550--665582	15	2.2	15	89	10	50	42	0	0	57	0.98
665738--665775	20	1.9	20	88	0	58	21	26	10	42	1.85
669474--669518	22	2.0	24	82	8	58	51	0	4	44	1.21
673969--674034	2	33.5	2	90	3	107	45	0	0	54	0.99
674142--674203	22	2.7	23	83	11	67	19	8	0	72	1.09
676820--677010	95	2.0	96	94	3	341	34	16	17	32	1.92
678151--678963	85	9.5	85	85	2	968	35	20	17	26	1.95
678151--678963	171	4.8	170	85	1	986	35	20	17	26	1.95
678151--678963	256	3.2	255	83	2	995	35	20	17	26	1.95
680693--680717	13	1.9	13	100	0	50	20	0	0	80	0.72
680824--680885	22	2.7	23	83	11	67	19	8	0	72	1.09
685652--685704	21	2.5	21	87	6	81	22	26	16	33	1.96
685694--685782	21	4.3	21	89	1	126	41	15	19	23	1.89
685651--685768	62	1.9	62	80	3	139	34	19	16	28	1.94
685773--685904	41	3.2	41	79	4	151	40	24	12	22	1.88
685818--685885	20	3.4	20	81	0	91	29	27	14	27	1.95
686078--686121	22	2.0	22	95	0	79	20	40	15	22	1.90
686386--686434	20	2.5	20	82	0	53	18	18	24	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
686402--686444	20	2.2	20	91	0	68	9	18	20	51	1.74
686581--686635	25	2.2	24	78	15	58	20	9	18	52	1.71
689346--689415	14	4.6	14	77	16	77	44	22	24	8	1.81
689325--689415	47	1.9	48	90	2	148	43	21	23	10	1.84
689373--689437	19	3.7	19	72	19	68	46	21	21	10	1.82
689359--689432	33	2.2	33	97	0	139	47	21	21	9	1.79
689444--689525	33	2.5	33	88	6	112	12	20	23	43	1.85
690050--690284	20	11.6	20	73	12	131	26	18	20	34	1.95
690151--690326	21	8.5	21	73	6	83	31	18	21	27	1.97
690047--690299	61	4.1	60	71	7	170	28	18	20	33	1.96
690068--690284	41	5.3	41	72	11	135	26	18	19	35	1.95
690713--690870	21	7.8	20	72	7	86	38	25	17	18	1.92
690837--691066	20	11.5	20	79	5	214	36	23	18	20	1.94
691749--691795	24	2.0	24	87	8	69	25	14	21	38	1.92
691970--691994	12	2.1	12	100	0	50	72	0	28	0	0.86
694278--694478	33	5.9	34	79	14	204	46	18	21	12	1.83
694292--694456	19	9.4	19	74	19	171	47	18	20	13	1.82
694320--694478	52	3.0	52	95	0	291	46	17	22	13	1.83
694503--694606	39	2.7	39	96	1	192	15	21	16	47	1.83
694503--694606	19	5.4	19	94	3	181	15	21	16	47	1.83
694704--694761	14	4.4	13	77	10	55	50	20	0	29	1.49
696672--696786	19	6.6	19	75	18	106	46	23	20	10	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
696708--696764	14	3.7	14	77	20	60	45	22	21	10	1.82
696689--696781	33	2.8	33	95	0	168	47	21	20	10	1.80
696782--696891	19	6.3	18	71	20	83	9	17	28	45	1.78
696782--696873	33	2.8	33	93	3	150	7	18	28	45	1.76
696939--697407	93	5.1	93	98	0	895	46	18	12	22	1.83
699108--699197	14	5.7	14	70	23	63	43	23	23	10	1.83
699100--699214	33	3.5	33	96	0	212	46	20	22	10	1.81
699122--699219	19	5.7	19	69	22	81	43	22	22	11	1.84
699215--699321	19	5.7	19	70	18	73	11	21	21	45	1.82
699258--699333	21	3.7	21	76	3	91	13	23	18	44	1.85
699419--699489	33	2.2	33	92	0	115	47	18	22	11	1.80
699671--699725	22	2.5	22	81	0	74	20	16	40	23	1.91
699872--700065	20	9.6	20	82	5	221	19	19	25	35	1.95
699874--700045	60	2.8	60	84	0	245	19	19	26	34	1.96
699871--700188	60	5.2	60	77	7	241	20	18	25	36	1.94
700052--700135	21	4.0	21	72	7	71	25	16	23	34	1.95
700032--700130	42	2.4	42	75	12	98	21	18	22	38	1.93
712720--712766	24	2.0	24	82	0	58	38	10	6	44	1.65
714555--714583	11	2.7	11	94	5	51	20	34	27	17	1.95
716130--716172	21	2.0	21	81	0	50	20	30	13	34	1.92
717824--718269	220	2.0	221	92	0	741	38	22	11	27	1.88
719789--719813	6	4.2	6	100	0	50	48	0	52	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
730350--730392	6	7.7	6	82	15	56	18	11	0	69	1.17
730351--730392	21	2.0	21	95	0	75	19	11	0	69	1.19
730357--730388	15	2.1	15	100	0	64	18	12	0	68	1.20
731046--731106	31	2.1	28	88	11	88	29	3	14	52	1.58
731113--731200	9	10.3	9	71	20	57	68	2	2	27	1.14
732585--732677	22	4.3	22	90	1	125	40	29	8	21	1.83
733803--734023	95	2.3	95	79	6	243	31	15	25	27	1.96
733969--734023	22	2.7	20	86	10	83	30	14	29	25	1.95
734470--734778	45	6.9	45	85	2	379	41	7	19	31	1.80
734433--734777	135	2.6	135	82	4	401	40	8	20	31	1.82
740846--740920	34	2.2	34	90	0	114	33	20	17	29	1.95
740910--740981	22	3.6	19	80	12	81	30	12	26	30	1.93
741429--741736	45	6.8	45	87	1	402	39	9	20	30	1.83
741430--741779	90	3.9	88	75	10	307	40	8	20	30	1.82
744437--744502	4	15.8	4	76	20	64	74	6	0	19	1.03
744438--744513	37	2.1	36	74	13	68	75	6	0	18	1.02
744437--744502	14	4.9	13	77	12	71	74	6	0	19	1.03
744437--744541	14	7.6	14	72	19	69	76	6	1	15	1.08
744412--744541	18	7.1	18	75	17	74	75	8	1	14	1.11
744603--744704	17	5.9	17	70	14	75	74	7	3	13	1.18
744682--744713	11	2.9	11	95	0	55	81	9	3	6	0.97
744682--744740	13	4.6	13	84	12	61	79	8	3	8	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
744672--744853	29	6.3	30	68	17	100	75	5	5	13	1.16
744590--744731	70	2.0	69	82	4	169	73	8	4	13	1.23
744772--744843	7	10.4	7	76	8	58	80	1	5	12	0.94
744763--744885	18	6.8	18	71	9	81	75	5	5	13	1.16
744803--744852	15	3.3	15	85	2	73	78	2	2	18	0.95
744796--744852	30	1.9	30	92	7	98	78	1	3	15	0.96
744683--744855	84	2.1	82	78	9	181	75	5	5	13	1.17
744677--744882	90	2.3	88	80	9	213	74	6	5	12	1.19
744988--745013	7	3.7	7	100	0	52	88	0	0	11	0.52
745650--745704	12	4.6	12	80	13	60	80	9	1	9	0.99

Tables:   1   2   3   4   5   6   7   8