genome.fa.s9261.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009261.1 Hibiscus syriacus cultivar Beakdansim tig00112912_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  923215

Tables:   1   2   3   4   

This is table  2  of  4  ( 434 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
236593--236888	147	2.0	147	100	0	592	23	17	17	41	1.90
237827--237915	45	2.0	45	100	0	178	65	15	6	12	1.46
239660--239719	30	2.0	30	100	0	120	16	43	0	40	1.48
242175--242488	157	2.0	157	98	0	610	41	12	19	26	1.87
242669--242693	12	2.1	12	100	0	50	8	8	24	60	1.52
242939--242963	12	2.1	12	100	0	50	8	8	24	60	1.52
244134--244181	16	2.9	16	78	3	51	33	2	2	62	1.18
252562--252682	51	2.4	50	90	4	183	41	11	15	31	1.83
252897--253043	45	3.4	43	79	6	163	26	23	19	30	1.98
254219--254279	18	3.4	18	75	6	70	11	37	9	40	1.75
256637--256679	15	2.7	15	86	13	52	34	20	11	32	1.89
261467--261513	22	2.1	23	84	11	62	55	0	4	40	1.19
261540--261585	21	2.2	21	88	0	65	41	2	2	54	1.25
264080--264113	18	1.9	17	88	5	50	23	0	5	70	1.09
264167--264233	22	3.2	22	76	21	65	14	8	1	74	1.13
264206--264239	18	1.9	18	88	5	52	14	14	0	70	1.17
264227--264259	14	2.3	15	84	5	50	27	3	0	69	1.03
287222--287267	7	6.6	7	83	16	51	80	0	19	0	0.71
287234--287268	15	2.2	16	95	5	63	82	0	17	0	0.66
287307--287347	6	6.7	6	84	15	57	80	0	14	4	0.87
287307--287347	14	3.3	12	90	10	57	80	0	14	4	0.87
289093--289142	20	2.5	20	81	12	57	40	6	4	50	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
290436--290582	65	2.2	65	83	10	176	17	7	0	74	1.09
290494--290544	14	3.8	14	72	17	54	19	1	1	76	0.98
290436--290570	32	4.2	32	75	14	116	16	8	0	74	1.09
290464--290618	65	2.4	63	81	13	174	14	8	0	76	1.05
290540--290664	58	2.1	60	80	7	139	13	8	2	76	1.11
290625--290670	24	1.9	24	82	8	58	15	6	0	78	0.95
290599--290671	35	2.2	33	82	9	85	13	6	4	75	1.15
290686--290731	16	2.9	16	78	15	51	19	2	4	73	1.10
290778--290827	18	2.6	19	81	6	57	16	4	2	78	1.00
290778--290829	24	2.2	24	85	0	68	15	3	1	78	0.98
292441--292494	15	3.5	15	79	18	58	40	0	3	55	1.17
299268--299538	39	7.0	39	79	5	253	32	20	26	19	1.97
299268--299538	78	3.5	78	80	5	289	32	20	26	19	1.97
299268--299536	116	2.3	116	77	5	272	32	20	27	19	1.97
304191--304699	55	9.4	54	82	5	548	38	18	14	28	1.90
304191--304699	109	4.7	110	84	2	625	38	18	14	28	1.90
304273--304699	164	2.6	163	85	2	588	36	18	15	29	1.92
310888--311286	55	7.4	54	85	5	527	36	18	16	28	1.93
310888--311284	108	3.7	109	85	4	552	36	18	16	28	1.93
315241--315283	18	2.4	18	92	0	68	20	6	0	72	1.08
315327--315418	11	8.2	11	71	17	57	18	7	1	72	1.14
315350--315418	5	12.6	5	75	22	59	14	7	1	76	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315337--315428	40	2.3	40	79	7	107	17	10	1	70	1.21
322710--322946	123	1.9	123	86	3	334	39	21	13	25	1.90
322749--322977	123	1.9	123	85	1	325	39	21	12	26	1.89
324380--324422	18	2.4	18	88	7	61	20	9	0	69	1.15
324487--324526	21	2.0	20	90	5	62	7	0	5	87	0.66
324512--324584	32	2.2	32	85	4	92	15	10	0	73	1.08
328710--328746	19	2.0	18	89	5	56	51	0	2	45	1.15
328705--328752	19	2.5	18	77	12	51	52	4	2	41	1.32
331874--331932	17	3.4	18	75	17	54	64	0	15	20	1.29
331970--332009	20	2.0	21	85	5	55	35	0	37	27	1.57
335393--335446	2	27.0	2	100	0	108	50	0	0	50	1.00
338023--338051	14	2.0	15	93	6	51	62	0	0	37	0.96
339289--339339	12	4.1	12	77	22	52	56	0	1	41	1.10
339286--339340	15	3.7	15	92	0	92	58	0	1	40	1.09
339905--339986	42	2.0	42	87	4	121	35	20	19	24	1.96
347559--347587	14	2.0	15	93	6	51	62	0	0	37	0.96
348858--348908	2	26.5	2	92	7	88	52	0	0	47	1.00
348950--349042	39	2.4	39	89	3	143	20	25	11	41	1.86
348984--349599	138	4.4	139	89	1	905	25	22	17	34	1.95
348984--349599	277	2.2	277	88	1	912	25	22	17	34	1.95
352404--352457	29	1.9	27	85	7	72	51	9	18	20	1.73
353933--354032	43	2.3	43	82	3	121	31	24	14	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353886--354274	130	3.0	128	69	8	336	33	18	17	30	1.94
354157--354264	43	2.5	43	83	0	126	35	21	16	26	1.95
353886--354437	260	2.1	260	87	0	771	34	17	16	31	1.92
353929--354346	130	3.2	128	69	11	337	33	19	16	30	1.94
354235--354399	87	1.9	88	79	3	190	36	18	12	32	1.89
354436--354936	140	3.6	139	83	1	601	26	20	16	36	1.94
354437--354936	138	3.6	137	82	3	588	26	20	16	36	1.94
361331--361404	37	2.0	37	100	0	148	27	13	21	37	1.91
368361--368814	225	2.0	229	97	1	871	31	13	20	35	1.91
368885--368971	3	29.3	3	97	2	167	66	0	0	33	0.92
374050--374100	12	4.1	12	74	18	50	13	9	9	66	1.44
383214--383253	17	2.3	18	82	8	55	25	20	0	55	1.44
386740--386781	22	1.9	22	85	0	57	76	0	16	7	1.00
387448--387486	17	2.3	17	86	8	53	58	17	15	7	1.59
387809--388316	139	3.7	139	88	2	767	35	17	22	24	1.96
387809--388316	273	1.9	272	92	0	854	35	17	22	24	1.96
388452--388558	43	2.5	43	81	3	126	31	16	17	33	1.93
389781--389813	13	2.5	13	100	0	66	30	12	9	48	1.71
392294--392320	2	13.5	2	100	0	54	48	0	0	51	1.00
392353--392407	23	2.3	24	78	12	60	43	9	3	43	1.53
392388--392428	16	2.6	16	88	0	64	41	12	2	43	1.55
392497--392591	2	47.0	2	92	6	156	47	1	1	50	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
392511--392659	45	3.4	45	84	8	164	43	2	8	46	1.44
392944--393025	39	2.1	39	90	0	128	40	25	0	34	1.56
393397--393435	13	2.9	13	82	17	53	48	0	10	41	1.37
393779--393895	54	2.2	54	85	0	162	21	17	25	35	1.95
399562--399608	22	2.1	22	96	0	85	14	25	14	44	1.84
401305--401347	18	2.4	18	84	7	52	67	0	6	25	1.15
407221--407276	18	3.0	18	74	10	51	66	1	5	26	1.23
407877--407923	22	2.1	22	92	0	76	63	4	14	17	1.45
410731--410932	2	105.5	2	67	23	98	51	4	2	40	1.39
410708--410792	28	3.0	28	77	20	88	60	2	2	35	1.23
410781--410932	35	4.3	34	76	17	132	49	5	3	42	1.41
410799--410910	44	2.5	44	80	13	124	50	4	1	42	1.32
410799--410932	36	3.7	35	73	21	116	48	5	2	43	1.40
417240--417297	29	1.9	30	86	6	82	50	8	12	29	1.69
420222--420299	36	2.2	36	97	2	149	33	10	12	43	1.77
421122--421220	50	2.0	50	82	4	119	33	23	21	22	1.97
426126--426493	46	8.1	46	92	1	591	20	23	10	44	1.83
426126--426493	137	2.7	137	92	2	589	20	23	10	44	1.83
426126--426493	183	2.0	181	91	1	592	20	23	10	44	1.83
432394--432429	14	2.6	14	95	0	63	13	38	0	47	1.44
433228--433394	20	7.5	20	68	22	93	20	26	10	42	1.85
433212--433404	46	4.2	46	91	3	300	21	24	10	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
433212--433370	20	6.8	26	67	24	113	20	25	10	43	1.83
436659--436687	13	2.2	13	100	0	58	0	31	62	6	1.22
437217--437251	17	1.9	19	88	11	56	22	0	5	71	1.07
437994--438049	17	3.5	17	68	26	59	26	3	0	69	1.04
437995--438076	23	3.8	20	70	27	60	26	2	0	70	0.99
437999--438086	30	3.0	30	84	14	114	28	2	0	69	1.01
438009--438089	13	6.1	13	69	9	56	28	1	0	70	0.95
437998--438080	20	4.3	19	73	11	62	27	2	0	69	1.00
437995--438088	33	2.8	33	76	19	97	27	2	0	70	0.99
444872--445315	148	2.9	152	96	3	824	23	14	23	37	1.92

Tables:   1   2   3   4