genome.fa.s9261.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009261.1 Hibiscus syriacus cultivar Beakdansim tig00112912_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  923215

Tables:   1   2   3   4   

This is table  3  of  4  ( 434 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
444872--445315	50	8.8	50	97	2	811	23	14	23	37	1.92
446732--446816	42	2.0	42	100	0	170	55	9	16	18	1.68
447955--448010	20	2.8	20	80	0	67	26	12	5	55	1.58
449915--449980	31	2.1	31	94	0	114	18	22	45	13	1.84
450999--451045	12	3.7	13	81	13	62	14	0	6	78	0.93
450996--451078	17	4.6	17	72	14	69	18	1	6	74	1.08
451001--451078	33	2.3	34	83	14	108	17	1	6	74	1.10
453036--453209	87	2.0	86	97	1	330	31	21	9	36	1.86
454110--454134	13	1.9	13	100	0	50	4	16	0	80	0.87
454766--454870	37	2.8	37	83	0	138	40	14	14	31	1.86
455317--455354	20	1.9	19	89	5	58	23	10	2	63	1.39
455449--455609	50	3.2	49	69	21	127	28	5	3	62	1.33
455632--455677	19	2.5	19	82	3	58	32	4	0	63	1.14
455649--455715	28	2.4	28	80	9	75	26	1	0	71	0.94
455556--455714	21	7.3	21	69	21	80	28	3	1	66	1.18
455650--455723	22	3.3	21	75	20	71	25	1	1	71	1.02
455651--455715	11	6.0	11	72	21	57	27	1	0	70	0.96
455654--455723	11	6.5	10	74	23	54	25	1	1	71	1.03
455801--455856	19	2.9	19	75	19	62	23	8	1	66	1.30
459552--459609	7	8.6	7	79	11	59	84	3	12	0	0.74
459558--459609	15	3.2	16	81	13	70	84	1	13	0	0.70
461069--462978	106	18.0	106	90	0	2867	33	24	18	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
463728--463832	37	2.8	37	86	0	147	40	15	14	30	1.87
464702--464757	19	2.9	19	75	19	62	23	8	1	66	1.30
465909--465946	19	2.0	19	85	10	51	52	5	5	36	1.47
466173--466214	15	2.8	16	78	10	52	54	2	7	35	1.41
467639--467879	36	6.4	37	86	5	256	24	23	15	36	1.94
467861--468096	117	2.0	117	97	0	445	27	19	17	35	1.95
468144--468185	20	2.1	20	86	0	57	35	21	14	28	1.92
468154--468202	20	2.5	20	93	0	80	34	16	14	34	1.89
478683--478722	12	3.2	12	83	16	55	57	0	0	42	0.98
490124--490162	17	2.4	17	95	4	71	43	0	5	51	1.24
493622--493647	11	2.4	11	100	0	52	19	0	0	80	0.71
504759--504980	20	11.1	21	70	20	122	38	0	6	54	1.29
504768--504960	19	11.1	15	68	25	50	39	0	5	53	1.28
504778--504972	5	39.0	5	71	22	110	39	0	5	54	1.26
504719--505007	61	4.7	61	72	16	156	40	2	5	51	1.39
504776--505012	125	1.9	123	80	10	277	40	1	5	53	1.31
509356--509387	15	2.1	15	100	0	64	40	0	15	43	1.47
524605--525090	55	9.0	55	77	10	430	33	16	19	29	1.94
524856--525098	56	4.4	55	79	10	237	33	16	17	32	1.93
530890--530916	14	1.9	14	100	0	54	29	29	18	22	1.97
530907--530975	23	3.0	23	93	2	111	26	26	18	28	1.98
535193--535232	13	2.9	14	86	13	57	75	0	0	25	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
535194--535233	19	2.0	20	85	4	55	77	0	0	22	0.77
535193--535233	14	2.9	15	89	10	61	75	0	0	24	0.80
542314--542359	21	2.1	22	88	4	67	71	8	8	10	1.30
556489--556526	9	4.2	9	80	12	51	7	18	0	73	1.06
557633--557676	9	4.7	9	91	5	61	36	0	0	63	0.95
557719--557773	25	2.2	25	86	0	74	38	3	1	56	1.28
557725--557759	18	2.0	17	88	5	52	40	5	0	54	1.24
563802--563883	36	2.3	35	87	4	119	28	6	15	50	1.68
573652--573822	42	4.0	42	76	4	173	28	16	20	34	1.94
575689--575738	16	2.9	17	88	11	75	22	26	22	30	1.99
578900--579074	90	2.0	89	90	1	278	45	6	11	36	1.66
585681--586090	193	2.1	192	79	2	428	36	11	11	40	1.78
597473--597632	65	2.5	64	84	7	191	27	16	21	33	1.95
600332--600412	23	3.6	22	80	8	83	25	22	25	25	2.00
600335--600412	21	3.5	22	78	8	86	26	21	25	25	2.00
612668--612712	19	2.4	19	92	0	72	11	15	2	71	1.24
612680--612717	19	2.1	19	90	5	60	13	15	0	71	1.16
618170--618222	6	8.7	6	95	4	97	83	16	0	0	0.66
626189--626473	123	2.3	124	86	3	396	28	5	21	44	1.76
626769--626823	28	2.0	27	82	10	67	32	9	45	12	1.74
629794--629910	61	1.9	61	84	3	155	29	29	16	24	1.96
631805--631846	19	2.2	18	84	16	50	80	4	4	9	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
637844--637894	9	5.7	9	79	9	59	0	17	0	82	0.67
640578--640630	7	7.4	7	78	2	52	58	24	3	13	1.51
640585--640630	21	2.2	21	92	0	74	58	23	4	13	1.52
640703--640818	61	1.9	61	82	3	144	32	27	14	25	1.95
641702--641760	31	1.9	31	86	3	84	35	20	8	35	1.83
645880--645966	30	2.9	30	82	3	104	27	19	8	44	1.78
649727--649808	43	2.0	43	95	4	150	17	14	6	62	1.51
652923--653096	84	2.0	85	95	4	316	35	13	16	35	1.87
656567--656731	31	5.4	31	77	2	154	30	30	25	13	1.94
665196--665229	17	2.0	17	94	0	59	38	11	5	44	1.65
669759--669841	41	2.0	41	100	0	166	40	14	8	36	1.76
677819--678046	112	2.1	109	88	4	341	30	16	18	34	1.93
680718--680750	16	2.0	17	88	5	50	36	18	3	42	1.66
682962--683002	12	3.5	12	83	9	50	56	0	4	39	1.21
683341--683373	17	2.0	17	88	5	50	75	6	12	6	1.16
690376--690449	4	18.8	4	76	13	55	20	0	2	77	0.90
690376--690447	12	6.2	12	75	16	62	19	0	2	77	0.88
690379--690449	16	4.5	16	80	1	72	19	0	2	77	0.89
690399--690448	6	8.2	6	79	16	50	18	0	0	82	0.68
690399--690448	10	5.1	10	81	13	52	18	0	0	82	0.68
691602--691652	15	3.3	15	80	5	57	27	0	1	70	0.98
691971--692266	42	6.9	43	84	4	366	24	20	11	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
691971--692266	86	3.5	86	87	1	407	24	20	11	43	1.85
693734--693791	10	5.5	10	76	15	55	75	12	0	12	1.04
693736--693800	31	2.2	30	94	5	114	73	12	0	13	1.09
696663--696763	42	2.4	42	77	8	109	31	20	23	23	1.98
696400--696768	197	1.9	195	86	3	535	31	17	19	31	1.95
696937--696988	20	2.6	20	90	0	86	32	25	21	21	1.98
697135--697247	42	2.7	41	79	4	118	36	19	18	25	1.95
697063--697728	220	2.9	225	83	7	792	35	16	16	30	1.92
697277--697745	241	1.9	241	87	2	683	34	16	16	32	1.91
700194--700560	54	6.8	54	87	1	502	33	20	19	27	1.96
705497--705804	54	5.7	54	84	3	388	32	20	17	29	1.96
705497--705804	108	2.9	108	87	2	440	32	20	17	29	1.96
705497--705804	162	1.9	162	87	1	447	32	20	17	29	1.96
713047--713370	45	7.2	45	79	7	354	42	12	20	24	1.86
713049--713370	89	3.6	90	82	6	375	42	12	20	23	1.86
713047--713370	134	2.4	134	83	4	384	42	12	20	24	1.86
719537--719596	20	2.9	21	72	7	59	43	11	20	25	1.85
720094--720365	45	6.0	45	88	1	375	39	13	21	26	1.90
720152--720218	22	3.0	21	64	19	55	34	11	25	28	1.91
720094--720365	135	2.0	136	90	6	428	39	13	21	26	1.90
726106--726432	45	7.2	45	85	4	399	42	12	18	26	1.86
729160--729414	110	2.3	109	82	6	284	46	15	16	21	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
735072--735136	3	22.0	3	93	3	114	33	0	0	66	0.92
736635--736922	144	2.0	145	99	0	569	38	13	15	33	1.86
737669--737710	18	2.3	18	91	0	66	47	9	9	33	1.68
737770--737822	17	3.1	17	77	0	61	45	13	11	30	1.78
744698--744741	20	2.3	19	84	7	54	40	9	27	22	1.84
745701--745725	2	12.5	2	100	0	50	48	0	0	52	1.00
750544--750894	130	2.7	131	81	5	395	32	19	18	29	1.96
751099--751179	41	2.0	41	95	0	144	34	24	14	25	1.94
753657--753843	103	1.8	104	84	1	259	46	24	8	20	1.78
754481--754628	78	1.9	78	83	2	190	39	16	12	31	1.86

Tables:   1   2   3   4