genome.fa.s9261.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009261.1 Hibiscus syriacus cultivar Beakdansim tig00112912_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  923215

Tables:   1   2   3   4   

This is table  4  of  4  ( 434 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
754433--754707	83	3.4	82	76	11	244	37	15	13	34	1.86
763095--763146	25	2.1	25	92	0	86	42	13	17	26	1.86
774512--774816	81	3.8	81	89	1	463	32	19	10	37	1.86
775096--775217	54	2.2	55	85	7	169	36	17	8	37	1.79
775903--775949	20	2.3	20	92	7	78	55	23	0	21	1.44
779505--779581	31	2.5	31	78	2	82	27	31	25	15	1.96
784310--784386	31	2.5	31	78	2	82	31	31	24	12	1.93
793784--794442	81	8.1	81	88	2	926	32	20	11	36	1.88
794958--795011	22	2.7	19	77	8	54	31	14	16	37	1.89
794960--795011	19	2.5	21	75	9	54	30	15	17	36	1.91
797436--797473	20	1.9	20	88	0	58	31	13	13	42	1.82
799930--800043	20	5.6	20	66	12	70	16	14	34	35	1.89
800045--800088	8	5.5	8	94	0	70	27	18	15	38	1.91
803229--803333	35	3.0	35	94	0	174	56	6	4	32	1.46
803470--803840	71	5.2	71	76	4	354	17	21	27	33	1.96
803474--803841	141	2.6	141	81	6	375	17	21	27	33	1.96
804719--804744	3	8.7	3	100	0	52	0	30	0	69	0.89
808392--808463	36	2.0	36	100	0	144	36	16	13	33	1.89
808727--808778	22	2.3	23	83	6	70	28	19	17	34	1.94
817091--817381	100	2.9	98	84	5	345	38	17	19	24	1.93
817435--817513	37	2.2	37	93	4	135	45	12	24	17	1.83
820999--821053	16	3.5	16	78	16	53	34	21	0	43	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
824781--824826	17	2.9	16	78	21	53	58	6	0	34	1.24
826620--826682	13	4.6	13	74	16	56	1	15	4	77	1.01
835482--835510	14	2.1	14	100	0	58	31	20	0	48	1.50
835514--835548	10	3.4	10	88	7	52	54	8	0	37	1.31
835642--835674	2	16.5	2	100	0	66	48	0	0	51	1.00
835883--835932	21	2.4	21	82	0	64	16	8	6	70	1.32
838088--838116	12	2.3	13	94	5	51	68	0	17	13	1.20
844397--844505	3	37.0	3	88	10	163	33	0	2	63	1.09
844498--844660	2	83.5	2	70	20	96	39	0	6	54	1.25
844502--844685	19	9.5	21	76	18	111	38	0	5	55	1.24
845961--845987	14	1.9	14	100	0	54	18	7	0	74	1.05
845994--846334	182	1.9	181	93	3	591	34	12	8	43	1.73
848500--848571	21	3.0	25	71	19	80	56	4	19	19	1.57
848479--848564	21	3.8	21	72	15	73	53	4	23	18	1.63
848476--848571	47	2.0	48	93	2	167	54	4	21	19	1.61
855762--856226	243	1.9	243	81	3	560	37	20	15	26	1.92
856858--856962	9	11.9	9	70	20	53	34	0	8	56	1.36
856858--856910	3	17.3	3	78	18	56	33	0	3	62	1.13
856858--857057	25	7.5	26	70	19	103	35	1	6	57	1.32
856857--857057	7	27.9	7	68	23	75	35	0	6	56	1.32
856857--857057	17	11.5	17	67	23	64	35	0	6	56	1.32
856858--857007	44	3.3	43	72	19	103	36	1	7	54	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
860144--860187	16	2.8	16	96	0	79	43	29	4	22	1.73
863866--863916	22	2.4	21	81	12	59	21	25	27	25	1.99
863881--863930	22	2.2	23	89	3	75	20	26	24	30	1.98
864808--864860	27	2.0	27	88	3	81	47	15	16	20	1.83
868475--868516	22	1.9	22	95	0	75	21	26	26	26	1.99
873979--874018	20	2.0	20	90	0	62	37	17	15	30	1.90
874011--874056	20	2.3	20	88	3	67	39	13	21	26	1.90
878386--878460	22	3.6	22	80	8	77	30	30	22	16	1.95
879821--879962	66	2.2	65	82	7	164	27	16	19	36	1.93
881137--881173	12	3.1	12	100	0	74	16	24	0	59	1.37
881222--881285	21	3.1	20	78	10	67	4	23	0	71	1.04
881244--881290	21	2.4	19	77	16	51	4	25	0	70	1.05
889236--889333	46	2.2	45	81	5	108	60	0	1	38	1.04
889291--889366	29	2.5	30	75	12	84	57	0	1	40	1.07
889314--889373	30	2.0	30	87	6	86	58	1	1	38	1.18
893308--893344	17	2.2	17	100	0	74	56	18	5	18	1.60
893902--893949	17	2.8	17	96	0	87	41	10	6	41	1.64
897453--897506	27	2.0	27	96	0	99	46	11	3	38	1.57
899453--899485	16	2.1	16	94	0	57	30	9	6	54	1.56
899506--899560	2	27.5	2	100	0	110	50	0	0	49	1.00
905681--905750	34	2.1	34	88	0	104	21	11	35	31	1.89
906505--906579	21	3.6	21	90	0	114	26	24	17	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
906573--906726	21	7.4	21	88	1	213	22	24	21	31	1.98
906574--906726	82	1.9	83	87	1	227	22	24	21	30	1.99
912576--912691	46	2.5	46	81	2	133	19	18	27	34	1.95
912896--912985	30	3.3	27	81	14	87	48	4	18	27	1.67
912909--913011	30	3.4	30	86	5	136	47	4	20	27	1.70
912909--913042	60	2.2	62	80	10	152	46	5	20	27	1.72
921966--922036	32	2.2	32	100	0	142	36	2	19	40	1.67
922251--922293	22	2.0	22	100	0	86	39	13	9	37	1.78

Tables:   1   2   3   4

The End!