genome.fa.s9289.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009289.1 Hibiscus syriacus cultivar Beakdansim tig00112988_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1661737

Tables:   1   2   3   4   5   6   7   8   

This is table  3  of  8  ( 855 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
482532--482558	14	1.9	14	100	0	54	66	0	3	29	1.09
482648--482672	2	12.5	2	100	0	50	48	0	0	52	1.00
485935--486023	12	7.6	12	71	15	53	49	3	0	47	1.18
485955--485984	10	2.8	11	90	10	53	60	0	0	40	0.97
486369--486412	22	1.9	24	86	9	65	50	0	2	47	1.13
489404--489456	22	2.4	22	81	9	63	45	3	0	50	1.19
489419--489460	11	3.7	11	96	3	75	45	2	0	52	1.13
492070--492097	14	2.0	14	100	0	56	0	50	0	50	1.00
494396--494471	34	2.2	34	92	2	125	40	23	7	27	1.82
502853--502885	17	1.9	17	100	0	66	21	24	6	48	1.72
521841--522023	91	2.0	91	96	0	339	36	18	16	28	1.93
524544--524596	27	2.0	27	88	0	79	37	18	11	32	1.87
528258--528296	20	2.0	19	85	14	53	56	0	2	41	1.13
532020--532156	64	2.1	64	90	2	222	32	10	21	34	1.89
537645--537736	23	4.0	23	86	0	130	16	29	23	30	1.96
537757--537806	24	2.1	24	88	7	75	16	18	24	42	1.89
539655--539762	21	5.4	21	61	20	61	26	35	0	37	1.57
539651--539774	39	3.2	39	94	1	214	31	31	0	37	1.58
542073--542110	20	1.9	20	94	0	67	15	26	31	26	1.96
545913--545952	21	1.9	21	85	10	55	35	10	2	52	1.48
556470--556494	6	4.2	6	100	0	50	0	52	0	48	1.00
560145--560184	21	1.9	21	89	0	62	40	30	22	7	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
560274--560589	24	13.2	24	91	2	402	17	23	41	16	1.89
562858--562905	19	2.4	20	77	19	55	41	4	8	45	1.53
570439--570599	63	2.5	65	82	5	168	26	18	21	33	1.96
572997--573049	25	2.1	26	82	10	65	56	0	0	43	0.99
579246--579288	19	2.3	19	83	0	50	27	25	27	18	1.98
581061--581088	2	14.0	2	100	0	56	50	0	0	50	1.00
584768--584872	52	2.1	49	84	10	131	45	14	21	18	1.84
584781--584880	50	2.0	51	92	4	166	42	14	25	19	1.88
594498--594718	119	1.9	119	98	0	424	26	17	28	27	1.98
596705--596770	28	2.4	26	78	14	69	43	10	4	40	1.59
601379--601413	17	2.0	18	88	5	54	40	0	0	60	0.97
603031--603081	21	2.4	21	87	6	68	47	1	7	43	1.43
603106--603148	21	2.2	20	83	8	52	48	4	6	39	1.51
603337--603464	47	2.7	47	86	6	168	22	15	17	44	1.86
603335--603462	23	5.3	24	80	6	143	22	16	17	43	1.87
603721--603758	12	3.2	12	92	3	60	42	13	21	23	1.88
604814--604842	4	7.2	4	100	0	58	75	0	0	24	0.80
604840--604866	2	13.5	2	100	0	54	51	0	0	48	1.00
605655--605701	18	2.7	18	90	3	69	34	8	29	27	1.87
605691--605811	44	2.8	44	89	0	188	29	9	20	39	1.85
606129--606610	238	2.1	230	89	6	740	40	18	12	28	1.88
612600--612655	20	2.7	21	86	2	69	30	23	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
612660--612764	19	5.2	19	82	13	120	34	5	28	31	1.81
626618--626689	15	4.7	15	83	6	99	22	34	26	16	1.95
626618--626701	15	5.3	16	72	16	59	22	33	26	17	1.96
626632--626701	32	2.2	32	92	0	113	22	34	25	17	1.96
626727--626781	15	3.4	16	77	7	58	27	29	29	14	1.95
637525--637595	15	4.7	15	79	10	90	22	35	25	16	1.95
637542--637605	31	2.1	31	90	0	101	25	34	23	17	1.96
637525--637607	15	5.3	16	70	18	50	22	33	25	18	1.96
637633--637687	15	3.4	16	77	7	58	27	29	29	14	1.95
648445--648484	15	2.7	15	100	0	80	17	35	30	17	1.93
648459--648535	31	2.4	31	85	8	93	27	31	27	14	1.95
648475--648535	31	1.9	33	90	6	99	29	29	27	13	1.94
648474--648530	15	3.5	16	80	9	71	29	31	26	12	1.92
655179--655227	24	2.0	24	92	0	80	30	18	14	36	1.90
655190--655238	24	2.0	24	92	0	80	28	24	16	30	1.96
656109--656398	146	2.0	145	89	2	438	37	18	16	26	1.92
657367--657415	23	2.1	23	88	7	73	55	12	16	16	1.70
658528--658613	38	2.3	37	86	9	113	50	5	1	43	1.34
658606--658644	20	2.0	20	89	0	60	38	2	2	56	1.27
665825--665878	13	4.2	13	81	15	67	61	1	0	37	1.07
668761--668797	2	18.5	2	100	0	74	51	0	0	48	1.00
670047--670145	33	3.0	33	94	1	164	45	15	7	32	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
670140--670179	21	1.9	21	94	0	71	47	7	15	30	1.72
680130--680313	92	2.0	92	96	0	341	36	14	5	44	1.68
680848--680905	28	2.1	28	86	0	80	48	13	0	37	1.43
680993--681042	24	2.1	24	100	0	100	12	20	38	30	1.88
681210--681245	18	1.9	19	88	5	56	27	5	11	55	1.57
689589--689627	15	2.6	15	87	0	60	28	12	12	46	1.79
690700--690881	59	3.1	58	79	10	156	35	22	2	39	1.69
692912--693071	60	2.7	60	79	5	173	33	18	3	44	1.67
693086--693133	25	2.0	25	91	4	80	25	12	6	56	1.59
693111--693190	42	1.9	42	92	0	133	26	20	6	47	1.73
693232--693278	23	2.0	23	91	0	76	46	14	6	31	1.70
698361--698413	22	2.5	22	78	3	63	41	3	1	52	1.30
699068--699098	2	15.5	2	93	0	53	45	0	3	51	1.17
699443--699475	2	16.5	2	93	0	57	54	0	0	45	0.99
701685--701728	19	2.4	18	92	3	70	2	13	31	52	1.53
701855--701889	12	2.9	12	91	0	61	48	34	14	2	1.58
705281--705348	34	2.0	33	94	2	118	44	13	0	42	1.43
706423--706448	2	13.0	2	100	0	52	50	0	50	0	1.00
711350--711408	29	2.2	26	76	21	68	25	11	8	54	1.65
711506--711568	23	3.0	20	71	15	63	26	4	15	52	1.63
713696--713734	21	1.9	21	89	5	62	56	0	0	43	0.99
713924--713966	15	2.9	15	79	10	52	46	27	2	23	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
714479--714517	19	2.1	19	95	0	69	20	38	15	25	1.92
714434--714626	64	3.0	64	77	11	191	31	24	15	28	1.95
717022--717048	2	13.5	2	100	0	54	51	0	0	48	1.00
720054--720133	24	3.5	23	75	14	85	26	26	21	26	1.99
722682--722721	21	1.9	21	94	0	71	32	30	15	22	1.94
722747--722785	19	2.1	19	85	0	51	23	35	12	28	1.91
722702--722894	64	3.0	64	76	8	187	32	24	14	28	1.94
726595--726700	26	3.8	26	74	17	97	41	0	2	54	1.21
726539--726645	13	8.7	12	71	19	69	38	0	4	57	1.20
726537--726692	63	2.6	60	85	10	205	39	0	3	56	1.18
726629--726671	17	2.7	15	76	13	50	41	0	0	58	0.98
726687--726748	19	3.3	19	78	15	58	37	1	0	61	1.06
726830--726920	22	3.7	22	70	25	74	36	0	10	52	1.37
726850--726952	32	3.5	32	75	24	136	34	0	12	52	1.40
726900--727049	80	1.9	80	98	0	291	32	0	14	52	1.42
726979--727083	32	3.6	32	73	24	122	32	0	13	54	1.39
727012--727054	22	2.0	22	100	0	86	34	0	13	51	1.42
727034--727184	81	1.9	80	91	1	248	32	0	13	53	1.40
727114--727221	32	3.7	32	72	23	119	35	0	12	51	1.40
727147--727189	22	2.0	22	90	0	68	32	0	13	53	1.41
727169--727735	80	6.9	79	84	7	665	34	0	13	52	1.41
727328--727547	32	6.7	32	68	24	154	34	0	13	52	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
727418--727470	14	3.5	14	72	18	52	37	0	7	54	1.29
727473--727515	22	2.0	22	95	0	77	37	0	9	53	1.33
727527--727568	21	2.0	22	95	4	77	35	0	14	50	1.43
727549--727718	32	5.7	32	84	14	254	34	0	11	53	1.38
727495--727718	117	1.9	118	97	0	423	35	0	11	53	1.38
727644--727686	22	2.0	22	95	0	77	34	0	11	53	1.37
727698--727740	22	2.0	22	100	0	86	34	0	13	51	1.42
726830--727398	54	10.6	54	70	17	364	33	0	13	52	1.41
727765--727823	31	1.9	31	92	0	100	42	10	6	40	1.65
731940--732016	31	2.6	29	82	8	100	40	9	12	37	1.76

Tables:   1   2   3   4   5   6   7   8