genome.fa.s9330.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009330.1 Hibiscus syriacus cultivar Beakdansim tig00113096_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1820295

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 950 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
242382--243182	83	9.6	83	94	1	1325	35	22	14	27	1.93
244330--244398	6	12.5	6	76	17	78	0	17	0	82	0.67
244330--244394	11	6.0	11	79	15	73	0	16	0	83	0.66
244331--244395	16	4.1	16	88	6	96	0	15	0	84	0.62
248542--249342	167	4.8	166	94	1	1352	35	22	14	26	1.93
248542--249342	83	9.6	83	95	1	1352	35	22	14	26	1.93
250491--250544	12	4.7	11	80	13	56	0	16	0	83	0.65
250491--250541	10	5.1	10	83	9	68	0	15	0	84	0.63
261798--261842	17	2.7	18	80	13	51	51	0	0	48	1.00
263333--263376	21	2.1	21	83	8	54	34	0	2	63	1.07
263375--263458	3	28.0	3	97	0	159	65	0	1	33	1.00
270011--270048	2	19.0	2	100	0	76	50	0	0	50	1.00
273425--273464	3	13.3	3	100	0	80	32	0	0	67	0.91
275415--275590	94	1.9	93	80	8	205	39	10	9	40	1.72
277069--277178	3	36.7	3	94	3	195	64	0	1	33	1.04
277497--277906	113	3.6	113	94	0	716	28	18	14	38	1.90
278608--279462	84	10.2	84	98	0	1622	36	21	14	27	1.92
280588--280626	18	2.2	18	86	4	53	7	15	0	76	0.99
291228--291264	15	2.7	15	88	12	53	62	8	5	24	1.44
291255--291305	18	2.9	17	75	16	50	72	1	0	25	0.95
293453--293497	20	2.3	19	84	3	54	35	0	2	62	1.08
293448--293503	29	2.0	30	83	13	75	37	0	1	60	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
293496--293622	3	42.7	3	93	1	220	63	0	1	34	1.04
296955--296995	21	1.9	21	90	5	64	68	12	0	19	1.21
297153--297201	15	3.3	15	85	2	64	57	12	22	8	1.61
298496--298821	124	2.6	126	79	3	350	40	15	11	32	1.83
301706--302072	130	2.8	130	79	3	407	40	17	10	31	1.84
304099--304680	135	4.3	136	83	6	659	32	15	20	32	1.94
324256--324622	131	2.8	131	80	4	438	40	16	10	32	1.83
337890--337920	15	2.1	15	100	0	62	25	6	45	22	1.76
338655--339079	112	3.8	112	92	0	688	24	13	14	46	1.81
339468--339632	21	7.9	21	72	15	112	21	21	22	34	1.97
339493--339632	42	3.3	42	91	0	235	21	20	23	34	1.97
339718--339750	6	5.7	6	92	7	59	33	51	15	0	1.43
340241--340280	6	6.7	6	100	0	80	0	17	50	32	1.47
340377--340531	20	7.6	20	74	15	147	25	21	18	35	1.95
340372--340535	41	4.0	41	93	1	267	25	21	18	34	1.96
340391--340577	62	3.0	65	76	14	185	25	21	19	34	1.96
340377--340585	41	5.1	40	89	4	249	25	21	19	33	1.97
340395--340585	21	9.2	20	75	8	145	25	20	19	34	1.97
340437--340585	21	7.2	21	80	11	155	24	21	20	32	1.97
343485--343523	6	6.2	6	82	11	51	79	0	5	15	0.90
343489--343549	13	4.7	13	80	13	56	77	0	4	18	0.95
343485--343555	9	7.9	9	74	21	60	76	1	4	18	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343497--343555	22	2.6	23	79	15	68	74	1	5	18	1.09
343599--343814	9	23.8	9	70	20	71	67	2	3	25	1.21
343743--343812	3	23.7	3	91	8	117	67	0	0	32	0.91
344012--344056	22	2.0	22	95	0	81	75	0	4	20	0.97
344054--344084	2	15.5	2	100	0	62	51	0	0	48	1.00
344551--344592	21	2.0	21	86	4	59	47	11	4	35	1.61
345094--345122	2	14.5	2	100	0	58	51	0	0	48	1.00
345910--346113	110	1.9	110	89	0	318	23	17	23	36	1.95
347210--347265	11	4.9	11	80	12	60	3	8	1	85	0.78
347223--347265	8	5.6	8	86	2	54	0	9	2	88	0.60
347210--347261	27	1.9	27	88	7	79	3	9	1	84	0.82
355900--355938	19	2.0	20	90	5	62	20	20	23	35	1.96
355900--355946	10	4.6	11	80	17	57	19	21	25	34	1.96
355905--355946	10	4.2	10	82	11	59	14	19	28	38	1.90
355959--356005	13	3.8	13	81	16	64	17	48	19	14	1.81
356013--356088	29	2.6	29	87	0	98	21	9	28	40	1.84
363157--363192	11	3.6	10	88	11	56	13	22	30	33	1.93
363205--363251	13	3.8	13	81	16	64	17	48	19	14	1.81
363259--363334	29	2.6	29	87	0	98	21	9	27	42	1.83
367438--367462	2	12.5	2	100	0	50	52	0	0	48	1.00
367531--367555	3	8.3	3	100	0	50	68	0	0	32	0.90
368171--368226	26	2.1	26	90	9	87	50	0	1	48	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369730--369771	11	3.9	11	84	6	50	2	16	2	78	0.96
369728--369774	21	2.2	21	92	0	76	2	17	2	78	0.94
370337--370388	3	17.0	3	80	4	59	65	1	1	30	1.14
374237--374459	73	3.1	72	90	3	324	19	11	12	56	1.67
374285--374403	41	3.1	40	65	32	107	19	12	12	55	1.68
374293--374408	38	3.1	37	63	20	89	18	12	12	56	1.65
374311--374424	36	3.1	36	64	20	92	18	13	13	55	1.69
377013--377074	23	2.6	24	84	2	81	41	17	14	25	1.88
377031--377082	24	2.2	23	86	3	68	44	21	13	21	1.86
378106--378161	29	2.0	29	89	3	87	30	42	14	12	1.82
378683--378727	19	2.2	21	81	18	60	17	8	2	71	1.23
379128--379657	270	2.0	268	96	2	989	42	4	7	44	1.54
386444--386578	51	2.6	51	82	1	171	40	17	20	22	1.91
388002--388083	42	2.0	42	87	0	119	24	21	19	34	1.97
387667--388692	249	4.1	249	93	0	1694	30	16	17	35	1.93
388251--388332	42	2.0	42	85	0	110	24	20	19	35	1.96
388500--388581	42	2.0	42	90	0	128	21	23	21	32	1.98
388709--388807	47	2.1	47	92	1	164	30	22	18	29	1.97
389355--389413	29	2.1	29	90	3	93	28	40	15	15	1.87
389652--389695	18	2.4	18	96	3	79	70	0	4	25	1.06
389950--389994	20	2.2	21	77	18	51	15	13	2	68	1.30
391094--391122	4	7.5	4	92	7	51	75	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391094--391123	11	2.6	11	94	5	51	73	0	0	26	0.84
392475--392703	20	11.4	20	81	5	230	37	25	17	19	1.94
393394--393440	24	2.0	24	87	8	69	25	14	21	38	1.92
393615--393639	12	2.1	12	100	0	50	72	0	28	0	0.86
396656--396752	20	5.2	20	71	18	91	46	18	23	11	1.81
396654--396718	21	3.1	21	80	4	87	47	16	24	10	1.79
396703--396759	14	3.7	14	75	20	60	43	22	24	8	1.81
396695--396776	33	2.5	33	100	0	164	47	19	23	9	1.79
396794--396849	14	3.6	14	74	21	58	8	23	23	44	1.81
396777--396856	33	2.4	33	93	0	133	8	20	22	48	1.76
396837--396910	21	3.5	21	80	7	96	14	20	17	47	1.83
396990--397060	33	2.2	33	92	0	115	49	16	22	11	1.78
397440--397591	20	7.6	20	88	2	207	19	19	27	33	1.96
397815--397930	56	2.1	53	81	7	126	49	1	2	46	1.25
398191--398228	18	2.1	19	85	5	51	44	2	0	52	1.14
398436--398496	15	4.1	15	74	17	56	36	11	6	45	1.66
400493--400530	20	1.9	20	100	0	76	26	31	21	21	1.98
401095--401183	20	4.4	20	76	8	99	23	15	30	30	1.96
401110--401204	41	2.3	41	92	0	163	22	14	28	34	1.93
401130--401226	21	4.7	21	82	7	126	20	13	26	39	1.90
401095--401225	62	2.1	62	87	4	167	22	15	28	34	1.94
401321--401369	19	2.5	19	90	3	71	22	14	28	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
406318--406395	31	2.5	31	93	0	129	26	26	11	34	1.91
414097--414138	20	2.1	20	86	0	57	38	19	9	33	1.84
419094--419367	59	4.6	59	90	1	408	34	10	17	36	1.85
419094--419429	177	1.9	177	84	3	446	36	9	17	36	1.83
419806--420011	68	3.0	68	82	5	243	31	15	24	28	1.95
420029--420153	45	2.7	45	87	2	178	47	8	19	25	1.76
424307--424591	59	4.8	59	89	1	410	33	9	18	38	1.84
424418--424518	31	3.4	31	62	13	75	34	10	15	38	1.83
425027--425272	68	3.6	68	87	1	325	31	13	23	31	1.93
425275--425687	68	6.1	68	86	1	560	30	13	24	31	1.94

Tables:   1   2   3   4   5   6   7   8