genome.fa.s9330.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009330.1 Hibiscus syriacus cultivar Beakdansim tig00113096_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1820295

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 950 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1611811--1611837	5	5.4	5	100	0	54	81	0	0	18	0.69
1614109--1614173	11	5.2	12	73	23	55	64	0	3	32	1.09
1614121--1614169	3	16.3	3	79	8	55	61	0	4	34	1.15
1614121--1614173	14	3.9	14	80	11	58	62	0	3	33	1.13
1620228--1620276	18	2.6	19	87	6	82	14	30	34	20	1.92
1620302--1620439	29	4.9	28	82	7	147	34	2	18	44	1.65
1620303--1620444	58	2.5	55	85	4	194	35	2	18	43	1.65
1627708--1627894	57	3.3	57	81	10	181	37	3	16	42	1.66
1627708--1627894	28	6.6	28	80	8	175	37	3	16	42	1.66
1631190--1631232	17	2.6	17	88	3	61	62	2	11	23	1.40
1631736--1631778	23	1.9	22	86	13	61	69	4	4	20	1.25
1633136--1633202	30	2.2	30	84	5	82	14	26	23	34	1.94
1641944--1641973	11	2.7	11	94	0	51	80	0	0	20	0.72
1642627--1642741	32	3.2	32	67	28	88	60	13	1	24	1.42
1642591--1642778	76	2.5	76	94	0	331	57	13	1	27	1.43
1644832--1645006	46	3.9	45	85	5	241	44	13	20	21	1.86
1644832--1645006	45	4.0	43	85	8	228	44	13	20	21	1.86
1644832--1644997	89	1.9	89	88	6	255	42	14	20	22	1.88
1644976--1645041	34	1.9	34	90	3	105	33	16	24	25	1.96
1647942--1648024	29	2.9	27	76	15	87	32	7	4	55	1.48
1651276--1651315	6	5.9	7	83	16	57	15	17	10	57	1.64
1651276--1651315	13	2.9	14	86	13	57	15	17	10	57	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1654869--1655048	75	2.4	75	85	0	270	32	16	21	29	1.95
1659902--1659944	20	2.1	21	91	4	70	18	27	37	16	1.92
1660629--1660671	22	2.0	22	95	0	77	39	16	25	18	1.91
1660709--1661186	218	2.2	220	89	3	734	29	16	20	32	1.95
1661576--1661602	3	9.0	3	100	0	54	33	0	0	66	0.92
1663057--1663099	2	21.5	2	95	0	77	2	0	46	51	1.13
1664781--1664817	19	1.9	19	94	0	65	24	29	27	18	1.98
1665130--1665178	21	2.2	23	78	7	57	6	18	14	61	1.53
1666711--1666766	6	8.8	6	75	14	51	30	14	1	53	1.51
1666711--1666740	11	2.6	11	94	5	51	30	16	0	53	1.44
1666692--1666768	39	2.0	37	82	9	93	31	11	2	54	1.50
1666714--1666777	13	4.8	13	80	14	60	31	10	3	54	1.51
1673068--1673101	2	17.5	2	93	6	61	50	0	0	50	1.00
1673393--1673442	25	2.2	25	82	13	63	36	10	0	54	1.34
1674867--1674904	15	2.5	15	91	0	58	47	26	5	21	1.71
1684070--1684195	45	2.9	44	81	9	161	41	12	20	25	1.88
1684157--1684229	34	2.1	34	82	9	87	38	13	20	27	1.90
1686588--1686643	29	1.9	29	81	0	67	33	5	21	39	1.76
1686641--1686801	27	5.8	28	73	7	85	32	4	12	50	1.60
1686650--1686742	27	3.4	27	83	2	116	33	5	6	54	1.49
1695347--1696084	370	2.0	363	97	1	1404	30	9	15	43	1.80
1697884--1697918	2	17.5	2	100	0	70	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1698179--1698308	3	43.7	3	87	1	190	33	2	0	63	1.07
1702840--1702908	29	2.5	27	77	11	77	33	4	18	43	1.70
1706049--1706248	108	1.9	108	81	10	248	38	10	8	43	1.69
1706794--1706851	24	2.4	24	77	11	57	31	5	1	62	1.27
1710134--1710165	15	2.1	15	94	0	55	25	18	9	46	1.79
1716272--1716303	2	16.0	2	100	0	64	50	0	0	50	1.00
1716458--1716514	28	2.1	27	86	3	78	35	7	3	54	1.45
1718409--1718446	15	2.5	15	91	0	58	47	26	5	21	1.71
1719431--1719469	20	1.9	20	89	5	60	35	20	12	30	1.90
1722130--1722168	20	2.0	21	85	10	55	69	5	10	15	1.34
1732666--1732697	14	2.3	14	94	0	55	40	9	0	50	1.35
1733022--1733082	31	2.0	31	83	0	77	50	18	4	26	1.66
1733053--1733118	24	2.7	25	79	4	64	53	16	9	21	1.71
1733031--1733091	31	2.0	31	83	0	77	50	18	4	26	1.66
1741574--1741732	48	3.5	47	90	5	247	43	13	18	24	1.86
1745021--1745068	22	2.2	23	88	7	73	20	0	27	52	1.47
1745134--1745172	17	2.3	17	90	0	60	15	28	28	28	1.96
1762389--1762481	22	4.1	24	82	6	81	35	6	4	53	1.46
1762386--1762477	17	5.1	18	77	13	75	35	6	3	54	1.43
1762379--1762488	3	37.7	3	67	8	66	34	6	4	54	1.46
1764526--1765024	247	2.0	247	91	0	818	32	16	17	34	1.92
1766680--1766869	3	66.0	3	70	14	116	32	3	4	59	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1766680--1766792	13	9.8	11	71	24	58	35	4	3	56	1.36
1766793--1766853	20	3.2	17	72	19	50	26	3	6	63	1.34
1766773--1766857	37	2.2	39	82	12	97	29	3	5	61	1.36
1772433--1772477	19	2.4	19	92	0	81	15	24	35	24	1.94
1772505--1772666	29	5.6	29	83	1	191	35	6	22	34	1.81
1772505--1772664	58	2.8	57	85	0	221	36	6	23	33	1.81
1779896--1780095	29	7.0	29	77	3	181	38	6	20	35	1.77
1779898--1780086	58	3.3	57	84	3	243	38	5	21	34	1.77
1783444--1783492	23	2.2	22	82	10	55	24	4	8	63	1.40
1787103--1787171	35	2.0	35	82	5	86	37	21	15	24	1.93
1788958--1789516	139	4.0	138	77	5	441	29	12	13	43	1.81
1789743--1789799	21	2.7	21	81	7	71	22	24	17	35	1.95
1789973--1790034	18	3.0	22	69	26	62	27	38	16	17	1.91
1790345--1790400	20	2.8	19	86	5	76	37	23	17	21	1.94
1790444--1790491	20	2.4	20	89	0	69	20	14	25	39	1.91
1790463--1790513	20	2.5	20	93	0	84	11	13	23	50	1.74
1790478--1790521	20	2.2	20	87	0	61	13	13	20	52	1.74
1792396--1792541	20	7.6	20	81	9	169	36	19	21	23	1.95
1792399--1792501	54	1.9	54	93	0	179	38	19	22	19	1.93
1792586--1792692	20	5.3	21	94	2	152	20	17	21	40	1.92
1792586--1792692	40	2.7	40	92	2	171	20	17	21	40	1.92
1793178--1793219	21	2.2	19	87	12	59	21	35	19	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1794774--1794869	33	2.8	33	87	3	120	42	19	22	14	1.88
1795034--1795106	33	2.2	34	92	2	121	43	19	23	13	1.86
1794666--1795112	237	1.9	237	95	0	813	34	13	20	31	1.91
1795136--1795181	19	2.4	19	96	0	83	15	19	15	50	1.79
1795188--1795260	20	3.7	20	87	3	103	20	20	21	36	1.95
1795188--1795264	40	1.9	41	89	7	122	20	20	20	37	1.94
1795191--1795279	20	4.4	20	80	10	85	22	20	21	35	1.96
1795191--1795279	40	2.2	40	84	7	110	22	20	21	35	1.96
1797708--1797759	24	2.2	24	82	0	59	36	21	19	23	1.95
1798596--1798655	20	3.0	20	82	4	68	26	20	18	35	1.95
1798621--1798666	20	2.2	20	84	3	56	30	19	19	30	1.97
1798650--1798693	21	2.0	22	86	4	63	38	15	25	20	1.92
1802243--1802289	22	2.1	22	84	7	60	70	0	2	27	0.99
1802245--1802286	17	2.4	18	84	8	59	71	0	2	26	0.98
1805882--1806022	43	3.3	42	89	4	214	41	16	20	21	1.90
1806781--1808627	496	3.7	496	99	0	3592	39	13	8	38	1.76
1808582--1808673	46	2.0	46	100	0	184	26	21	13	39	1.90
1817335--1817878	138	4.0	138	77	7	443	29	12	14	42	1.83
1819130--1819169	2	21.5	2	85	14	59	50	0	0	50	1.00
1819133--1819169	13	2.9	13	96	4	67	48	0	0	51	1.00
1819327--1819366	12	3.4	12	82	6	55	57	17	15	10	1.64
1819326--1819408	24	3.5	24	80	12	100	49	15	15	19	1.80

Tables:   1   2   3   4   5   6   7   8

The End!